Author

B. J. Fremin

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Microbiology· 3

Signature Assays, Organisms & Methods

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Research Focus:cell type annotation· 2 Approach:deep learning· 2 Approach:experimental assay· 2 Organism:human· 2 Assay:metagenomics· 2 Research Focus:benchmarking· 1 Organism:E. coli· 1 Research Focus:gene regulatory network inference· 1

Frequent Co-Authors

A. S. Bhatt· 3 shared A. B. Boehm· 1 shared A. Natarajan· 1 shared A. R. Rezvani· 1 shared C. J. Severyn· 1 shared D. T. Schmidtke· 1 shared E. F. Brooks· 1 shared G. Caves· 1 shared

Activity by Year

2018-2023 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 45 mutual co-author links

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3 shared papersMicrobiology

A. S. Bhatt

Mutual co-authors in cluster

Author profile →

3 papers

Recent·Most cited

Tomato brown rugose fruit virus Mo gene is a novel microbial source tracking marker

A. Natarajan, B. J. Fremin, D. T. Schmidtke, M. Wolfe, S. Zlitni, K. E. Graham, E. F. Brooks, C. J. Severyn, K. M. Sakamoto, N. J. Lacayo, S. Kuersten, J. Koble, G. Caves, I. Kaplan, U. Singh, , A. B. Boehm

The paper designs and tests novel viral microbial source tracking markers based on ToBRFV genomes, finding they are sensitive, specific, and more prevalent in human stool and wastewater than existing markers.

bioRxiv · Jan 9, 2023 · PreprintMicrobiology

Repurposing Ribo-Seq to provide insights into structured RNAs

B. J. Fremin, A. S. Bhatt

The paper shows that contaminant RNAs in bacterial Ribo-Seq data can reveal secondary structures of non-coding RNAs, enabling large-scale in vivo RNA structure analysis.

bioRxiv · May 18, 2020 · PreprintMicrobiology

Metagenome-wide measurement of protein synthesis in the human fecal microbiota using MetaRibo-Seq

B. J. Fremin, A. S. Bhatt

This study introduces MetaRibo-Seq, a method for ribosome profiling in complex bacterial communities, showing it correlates better with protein abundance than metatranscriptomics in low diversity samples.

bioRxiv · Dec 7, 2018 · PreprintMicrobiology