Author

E. F. Brooks

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Microbiology· 3 Bioengineering· 1

Signature Assays, Organisms & Methods

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Organism:human· 3 Assay:metagenomics· 3 Approach:deep learning· 2 Approach:statistical model· 2 Organism:bacteria (other)· 1 Approach:biophysical modeling· 1 Research Focus:cell type annotation· 1 Research Focus:clustering· 1

Frequent Co-Authors

A. S. Bhatt· 4 shared A. R. Rezvani· 2 shared A. B. Boehm· 1 shared A. Cesaro· 1 shared A. M. Miklos· 1 shared A. Natarajan· 1 shared A. S. Hickey· 1 shared B. A. Siranosian· 1 shared

Activity by Year

2022-2023 · peak 3/yr

Co-Author Collaboration Network

10 top collaborators · 18 mutual co-author links

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4 shared papersMicrobiology

A. S. Bhatt

Mutual co-authors in cluster

Author profile →

4 papers

Recent·Most cited

Human gut metagenomic mining reveals an untapped source of peptide antibiotics

M. D. T. Torres, E. F. Brooks, A. Cesaro, H. Sberro, C. Nicolaou, A. S. Bhatt, C. de la Fuente

The paper identifies hundreds of novel peptide antibiotics from human gut metagenomes, showing antimicrobial activity and potential therapeutic applications.

bioRxiv · Aug 31, 2023 · PreprintBioengineering

Intragenic DNA inversions expand bacterial coding capacity

R. B. Chanin, P. T. West, R. M. Park, J. Wirbel, G. Z. M. Green, A. M. Miklos, M. O. Gill, A. S. Hickey, E. F. Brooks, A. S. Bhatt

The paper identifies intragenic DNA inversions in prokaryotes using long-read sequencing, showing they allow genes to encode multiple protein versions without increasing genome size.

bioRxiv · Mar 11, 2023Microbiology

Tomato brown rugose fruit virus Mo gene is a novel microbial source tracking marker

A. Natarajan, B. J. Fremin, D. T. Schmidtke, M. Wolfe, S. Zlitni, K. E. Graham, E. F. Brooks, C. J. Severyn, K. M. Sakamoto, N. J. Lacayo, S. Kuersten, J. Koble, G. Caves, I. Kaplan, U. Singh, , A. B. Boehm

The paper designs and tests novel viral microbial source tracking markers based on ToBRFV genomes, finding they are sensitive, specific, and more prevalent in human stool and wastewater than existing markers.

bioRxiv · Jan 9, 2023 · PreprintMicrobiology

Rare transmission of commensal and pathogenic bacteria in the gut microbiome of hospitalized adults

B. A. Siranosian, E. F. Brooks, T. Andermann, A. R. Rezvani, N. Banaei, H. Tang, A. S. Bhatt

This study identifies potential bacterial transmission between hospitalized HCT patients through metagenomic sequencing, finding shared strains in some pairs but not widespread colonization.

Nature Communications · Jan 31, 2022Peer-reviewedMicrobiology