Author

C. M. Singleton

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Microbiology· 6

Signature Assays, Organisms & Methods

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Assay:metagenomics· 6 Approach:statistical model· 4 Research Focus:cell type annotation· 2 Approach:experimental assay· 2 Research Focus:host-pathogen & immune response· 2 Organism:bacteria (other)· 1 Research Focus:benchmarking· 1 Research Focus:clustering· 1

Frequent Co-Authors

F. Petriglieri· 3 shared M. Albertsen· 3 shared P. H. Nielsen· 3 shared B. J. Woodcroft· 2 shared J. M. Kristensen· 2 shared M. S. Dueholm· 2 shared R. H. Kirkegaard· 2 shared S. M. Karst· 2 shared

Activity by Year

2019-2024 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 42 mutual co-author links

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3 shared papersMicrobiology

F. Petriglieri

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6 papers

Recent·Most cited

Microflora Danica: the atlas of Danish environmental microbiomes

C. M. Singleton, T. B. Jensen, F. Delogu, E. A. Sorensen, V. R. Jorgensen, S. M. Karst, Y. Yang, K. S. Knudsen, M. Sereika, F. Petriglieri, S. Knuttson, S. M. Dall, R. H. Kirkegaard, J. M. Kristensen, B. J. Woodcroft, , M. Albertsen

Microflora Danica compiles 10,686 shotgun metagenomes and 449 rRNA datasets to create an atlas of Danish environmental microbiomes, revealing hidden homogeneity and novel nitrifiers.

bioRxiv · Jun 27, 2024Microbiology

Microbial aerotrophy enables continuous primary production in diverse cave ecosystems

S. Bay, G. Ni, R. Lappan, B. Leung, W. W. Wong, S. Holland, N. Athukorala, K. Sand Knudsen, Z. Fan, M. Kerou, S. Jain, O. Schmidt, V. Eate, D. Clarke, T. Jirapanjawat, , C. Greening

This study identifies aerotrophy as a primary energy source in caves, revealing microbial use of atmospheric trace gases for continuous primary production.

bioRxiv · May 30, 2024Microbiology

A comprehensive overview of the Chloroflexota community in wastewater treatment plants worldwide

F. Petriglieri, Z. Kondrotaite, C. M. Singleton, M. Nierychlo, M. S. Dueholm, P. H. Nielsen

This study characterizes Chloroflexota in wastewater treatment plants globally, identifying novel taxa and their ecological roles in carbon and nutrient cycling.

bioRxiv · Jun 26, 2023Microbiology

Diverse Arctic lake sediment microbiota shape methane emission temperature sensitivity

J. B. Emerson, R. K. Varner, M. Wik, D. H. Parks, R. B. Neumann, J. E. Johnson, C. M. Singleton, B. J. Woodcroft, R. Tollerson, A. Owusu-Dommey, M. Binder, N. L. Freitas, P. M. Crill, S. R. Saleska, G. W. Tyson, V. I. Rich

This study shows that spatial variations in sediment microbiota influence methane emission temperature sensitivity in Arctic lakes.

Nature Communications · Oct 5, 2021Peer-reviewedMicrobiology

Connecting structure to function with the recovery of over 1000 high-quality activated sludge metagenome-assembled genomes encoding full-length rRNA genes using long-read sequencing

C. M. Singleton, F. Petriglieri, J. M. Kristensen, R. H. Kirkegaard, T. Y. Michaelsen, M. H. Andersen, Z. Kondrotaite, S. M. Karst, M. S. Dueholm, P. H. Nielsen, M. Albertsen

The paper uses long-read sequencing to recover over 1000 high-quality MAGs from wastewater treatment plants, enabling linkage of microbial community structure to function.

Nature Communications · Mar 31, 2021Peer-reviewedMicrobiology

The signal and the noise - characteristics of antisense RNA in complex microbial communities

T. Y. Michaelsen, J. Brandt, C. M. Singleton, R. Kirkegaard, N. Segata, M. Albertsen

This paper examines antisense RNA in microbial communities, finding high variability and mixed evidence for its origin in transcriptional noise.

bioRxiv · Sep 20, 2019Microbiology