Author

C. Nef

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Ecology· 4 Evolutionary Biology· 1 Microbiology· 1 Plant Biology· 1

Signature Assays, Organisms & Methods

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Approach:statistical model· 7 Assay:metagenomics· 4 Research Focus:ecology & biodiversity· 3 Research Focus:chromatin & epigenetic regulation· 2 Approach:comparative / phylogenetic analysis· 2 Research Focus:cell type annotation· 1 Research Focus:clustering· 1 Research Focus:host-pathogen & immune response· 1

Frequent Co-Authors

C. Bowler· 7 shared E. Delage· 3 shared R. G. Dorrell· 3 shared S. Chaffron· 3 shared C. de Vargas· 2 shared C. Lovejoy· 2 shared E. Pelletier· 2 shared J. J. Pierella Karlusich· 2 shared

Activity by Year

2020-2024 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 39 mutual co-author links

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7 shared papersEcology

C. Bowler

Mutual co-authors in cluster

Author profile →

7 papers

Recent·Most cited

Patterns and drivers of diatom diversity and abundance in the global ocean

J. J. Pierella Karlusich, K. Cosnier, L. Zinger, N. Henry, C. Nef, G. Bernard, E. Scalco, E. Dvorak, Tara Oceans Coordinators, F. R. Jimenez Vieira, E. Delage, S. Chaffron, S. Ovchinnikov, A. Zingone, C. Bowler

This study analyzes diatom diversity and abundance in the global ocean using Tara Oceans data, identifying key environmental drivers and community patterns.

bioRxiv · Jun 8, 2024Ecology

Genome-scale community modelling reveals conserved metabolic cross-feedings in epipelagic bacterioplankton communities

N. Giordano, M. Gaudin, C. Trottier, E. Delage, C. Nef, C. Bowler, S. Chaffron

The paper uses integrated ecological and metabolic modelling to identify conserved metabolic cross-feedings in epipelagic bacterioplankton communities.

bioRxiv · Jun 21, 2023Ecology

Presence of vitamin B12 metabolism in the last common ancestor of land plants

R. G. Dorrell, C. Nef, S. Altan-Ochir, C. Bowler, A. G. Smith

The paper identifies B12 metabolism in the last common ancestor of land plants through phylogenetic analysis of genes across plant and algal genomes.

bioRxiv · Jun 7, 2023Plant Biology

Divergent and diversified proteome content across a serially acquired plastid lineage

A. M. G. Novak Vanclova, C. Nef, A. Vancl, F. Liu, Z. Füssy, C. Bowler, R. G. Dorrell

The paper analyzes plastid proteomes across seven kareniacean dinoflagellates to understand the evolutionary origins and functional contributions of haptophyte-derived plastid proteins.

bioRxiv · Nov 30, 2022 · PreprintMicrobiology

Whole-genome scanning reveals selection mechanisms in epipelagic Chaetoceros diatom populations

C. Nef, M.-A. Madoui, E. Pelletier, C. Bowler

The paper uses genome-resolved metagenomics to analyze genetic diversity in Chaetoceros diatoms, revealing selection mechanisms related to nutrient availability in polar regions.

bioRxiv · May 19, 2022 · PreprintEcology

Within-Arctic horizontal gene transfer as a driver of convergent evolution in distantly related microalgae

R. G. Dorrell, A. Kuo, Z. Fussy, E. H. Richardson, A. Salamov, N. Zarevski, N. J. Freyria, F. M. Ibarbalz, J. Jenkins, J. J. Pierella Karlusich, A. Stecca Steindorff, R. E. Edgar, L. Handley, K. Lail, A. Lipzen, , C. Lovejoy

The paper identifies horizontal gene transfer as a driver of convergent evolution in Arctic microalgae, highlighting ice-binding domain gene transfers between distantly related species.

bioRxiv · Jul 31, 2021Evolutionary Biology

Environmental vulnerability of the global ocean plankton community interactome

S. Chaffron, E. Delage, M. Budinich, D. Vintache, N. Henry, C. Nef, M. Ardyna, A. A. Zayed, P. C. Junger, P. E. Galand, C. Lovejoy, A. E. Murray, H. Sarmento, Tara Oceans Coordinators, S. G. Acinas, , D. Eveillard

The paper assesses the vulnerability of the global ocean plankton community interactome to environmental change using niche modeling and Tara Oceans data.

bioRxiv · Nov 9, 2020 · PreprintEcology