Author

A. A. Zayed

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Microbiology· 4 Ecology· 2

Signature Assays, Organisms & Methods

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Approach:statistical model· 6 Research Focus:cell type annotation· 4 Assay:metagenomics· 4 Research Focus:clustering· 3 Research Focus:gene regulatory network inference· 3 Approach:deep learning· 2 Approach:experimental assay· 2 Assay:whole-genome sequencing· 2

Frequent Co-Authors

M. B. Sullivan· 6 shared C. Bowler· 3 shared P. Wincker· 3 shared C. de Vargas· 2 shared D. Eveillard· 2 shared D. Iudicone· 2 shared D. R. Cronin· 2 shared E. Karsenti· 2 shared

Activity by Year

2020-2022 · peak 3/yr

Co-Author Collaboration Network

10 top collaborators · 39 mutual co-author links

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Curved chords = mutual co-authorship

6 shared papersMicrobiology

M. B. Sullivan

Mutual co-authors in cluster

Author profile →

6 papers

Recent·Most cited

Long-read powered viral metagenomics in the oligotrophic Sargasso Sea

J. L. Warwick-Dugdale, F. Tian, M. L. Michelsen, D. R. Cronin, K. Moore, A. Farbos, L. Chittick, A. Bell, H. H. Buchholz, R. J. Parsons, A. A. Zayed, M. J. Allen, M. B. Sullivan, B. Temperton

This study uses long-read sequencing to analyze viral communities in the Sargasso Sea, identifying new phage populations and highlighting the importance of long reads for viral genome diversity and function.

bioRxiv · Sep 19, 2022Microbiology

Uncharted biosynthetic potential of the ocean microbiome

L. Paoli, H.-J. Ruscheweyh, C. C. Forneris, S. Kautsar, Q. Clayssen, G. Salazar, A. Milanese, D. Gehrig, M. Larralde, L. Carroll, P. Sanchez, A. A. Zayed, D. R. Cronin, S. G. Acinas, P. Bork, , S. Sunagawa

This study identifies over 40,000 putative biosynthetic gene clusters in ocean microbes, revealing novel biosynthetic potential and a new candidate genus with diverse metabolic capabilities.

bioRxiv · Mar 24, 2021Microbiology

Ocean-wide comparisons of mesopelagic planktonic community structures

J. Rigonato, M. Budinich, A. A. Murillo, M. C. Brandao, J. J. Pierella Karlusich, Y. D. Soviadan, A. C. Gregory, H. Endo, F. Kokoszka, D. Vik, N. Henry, P. Fremont, K. Labadie, A. A. Zayed, C. Dimier, , O. Jaillon

This study compares mesopelagic planktonic community structures across different oxygen conditions and identifies environmental drivers and community modules.

bioRxiv · Feb 26, 2021Ecology

Novel integrative elements and genomic plasticity in ocean ecosystems

T. Hackl, R. Laurenceau, M. J. Ankenbrand, C. Bliem, Z. Cariani, E. Thomas, K. D. Dooley, A. A. Arellano, S. L. Hogle, P. Berube, G. E. Leventhal, E. Luo, J. Eppley, A. A. Zayed, J. Beaulaurier, , S. W. Chisholm

The paper identifies tycheposons, mobile genetic elements in Prochlorococcus, that drive genomic plasticity through gene exchange and contribute to microbial adaptation in ocean ecosystems.

bioRxiv · Dec 28, 2020Microbiology

Environmental vulnerability of the global ocean plankton community interactome

S. Chaffron, E. Delage, M. Budinich, D. Vintache, N. Henry, C. Nef, M. Ardyna, A. A. Zayed, P. C. Junger, P. E. Galand, C. Lovejoy, A. E. Murray, H. Sarmento, Tara Oceans Coordinators, S. G. Acinas, , D. Eveillard

The paper assesses the vulnerability of the global ocean plankton community interactome to environmental change using niche modeling and Tara Oceans data.

bioRxiv · Nov 9, 2020 · PreprintEcology

DRAM for distilling microbial metabolism to automate the curation of microbiome function

M. Shaffer, M. A. Borton, B. B. McGivern, A. A. Zayed, S. L. La Rosa, L. M. Solden, P. Liu, A. B. Narrowe, J. Rodriguez-Ramos, B. Bolduc, M. C. Gazitua, R. A. Daly, G. J. Smith, D. R. Vik, P. B. Pope, , K. C. Wrighton

DRAM automates microbiome function curation by translating genomic data into microbial traits, accurately assigning metabolic roles in soil and gut communities.

Nucleic Acids Research · Aug 7, 2020Peer-reviewedMicrobiology