Author

D. Ntekoumes

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Bioengineering· 1 Biophysics· 1 Cancer Biology· 1

Signature Assays, Organisms & Methods

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Research Focus:cell type annotation· 2 Approach:experimental assay· 2 Approach:statistical model· 2 Research Focus:benchmarking· 1 Assay:bulk RNA-seq· 1 Research Focus:cancer & tumor microenvironment· 1 Research Focus:cell signaling & trafficking· 1 Approach:deep learning· 1

Frequent Co-Authors

S. Gerecht· 2 shared A. DeVine· 1 shared A. Dickson· 1 shared A. M. Fuller· 1 shared A. R. Anderson· 1 shared A. Rizzi· 1 shared A. Weeraratna· 1 shared B. L. de Groot· 1 shared

Activity by Year

2020-2023 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 17 mutual co-author links

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2 shared papersBioengineering

S. Gerecht

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Author profile →

3 papers

Recent·Most cited

Engineering the microstructure and spatial bioactivity of MAP scaffolds in vitro instructs neovascularization in vivo

A. R. Anderson, E. L. P. Caston, L. Riley, L. Nguyen, D. Ntekoumes, S. Gerecht, T. Segura

This study tunes microstructure and bioactivity of MAP scaffolds to guide cell patterning and promote vessel formation in vitro and enhance neovascularization in vivo.

bioRxiv · Nov 1, 2023 · PreprintBioengineering

Oncogene-induced matrix reorganization controls CD8+ T cell function in the soft-tissue sarcoma microenvironment

A. M. Fuller, H. C. Pruitt, Y. Liu, V. M. Irizarry-Negron, H. Pan, H. Song, A. DeVine, R. S. Katti, S. Devalaraja, G. E. Ciotti, M. Gonzalez, E. F. Williams, I. Murazzi, D. Ntekoumes, N. Skuli, , T. S. K. Eisinger-Mathason

This study identifies YAP1-driven collagen VI deposition in sarcoma as a mechanism suppressing CD8+ T cell function through ECM remodeling and autophagy inhibition.

bioRxiv · Mar 31, 2022Cancer Biology

The SAMPL6 SAMPLing challenge: Assessing the reliability and efficiency of binding free energy calculations

A. Rizzi, T. Jensen, D. R. Slochower, M. Aldeghi, V. Gapsys, D. Ntekoumes, S. Bosisio, M. Papadourakis, N. M. Henriksen, B. L. de Groot, Z. Cournia, A. Dickson, J. Michel, M. K. Gilson, M. R. Shirts, , J. D. Chodera

This study evaluates binding free energy calculation methods using the SAMPL6 challenge, finding variations in efficiency and reproducibility across different systems and methods.

bioRxiv · Jan 3, 2020Biophysics