Author

D. Subedi

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Microbiology· 6

Signature Assays, Organisms & Methods

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Approach:experimental assay· 5 Organism:human· 3 Assay:whole-genome sequencing· 3 Organism:bacteria (other)· 2 Research Focus:cell type annotation· 2 Research Focus:host-pathogen & immune response· 2 Research Focus:clustering· 1 Assay:DNA methylation· 1

Frequent Co-Authors

J. J. Barr· 3 shared D. Korneev· 2 shared F. L. Gordillo Altamirano· 2 shared M. D. P. Willcox· 2 shared R. Patwa· 2 shared S. A. Rice· 2 shared X. Kostoulias· 2 shared A. K. Vijay· 1 shared

Activity by Year

2018-2024 · peak 3/yr

Co-Author Collaboration Network

10 top collaborators · 24 mutual co-author links

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3 shared papersMicrobiology

J. J. Barr

Mutual co-authors in cluster

Author profile →

6 papers

Recent·Most cited

Rational Design of Frontline Institutional Phage Cocktail for the Treatment of Nosocomial Enterobacter cloacae Complex Infections

D. Subedi, F. L. Gordillo Altamirano, R. Deehan, A. Perera, R. Patwa, X. Kostoulias, D. Korneev, L. Blakeway, N. Macesic, A. Y. L. Peleg, J. J. Barr

The paper develops a phage cocktail, Entelli-02, effective against multidrug-resistant Enterobacter cloacae complex strains with 99% coverage and 92% efficacy in a hospital strain collection.

bioRxiv · Jun 30, 2024Microbiology

Temperate gut phages are prevalent, diverse, and predominantly inactive

S. Dahlman, L. Avellaneda-Franco, C. Kett, D. Subedi, R. B. Young, J. A. Gould, E. L. Rutten, E. L. Gilliver, C. J. Turkington, N. Nezam-Abadi, J. A. Grasis, D. Lyras, R. A. Edwards, S. C. Forster, J. J. Barr

The paper characterizes active temperate gut phages from bacterial isolates, finding most are inactive and their induction is complex and context-dependent.

bioRxiv · Aug 17, 2023Microbiology

Temporal stability and genetic diversity of 48-year old T-series phages

D. Subedi, J. Barr

This study compares genetic stability of T-series phages over 48 years, finding limited genomic changes but no phenotypic differences between sublines.

bioRxiv · Sep 24, 2020Microbiology

Acquired fluoroquinolone resistance genes in corneal isolates of Pseudomonas aeruginosa

M. Khan, S. Summers, S. A. Rice, F. Stapleton, M. D. P. Willcox, D. Subedi

The paper investigates the prevalence of acquired fluoroquinolone resistance genes in Pseudomonas aeruginosa corneal isolates and their association with antibiotic susceptibility.

bioRxiv · May 17, 2020Microbiology

Bacteriophages targeting Acinetobacter baumannii capsule induce antimicrobial resensitization

F. L. Gordillo Altamirano, J. H. Forsyth, R. Patwa, X. Kostoulias, M. Trim, D. Subedi, S. Archer, F. C. Morris, C. Oliveira, L. Kielty, D. Korneev, M. K. O'Bryan, T. L. Lithgow, A. Y. Peleg, J. J. Barr

This study identifies phages targeting Acinetobacter baumannii capsule that induce antimicrobial resensitization by disrupting capsule biosynthesis and enhancing susceptibility to antibiotics and the immune system.

bioRxiv · Feb 25, 2020Microbiology

Accessory genome contributes to the virulence and resistance of the ocular isolate of Pseudomonas aeruginosa: A complete genome analysis

D. Subedi, G. S. Kohli, A. K. Vijay, M. D. P. Willcox, S. A. Rice

The paper analyzes the complete genome of an ocular Pseudomonas aeruginosa isolate to identify accessory genes contributing to virulence and antibiotic resistance.

bioRxiv · Dec 17, 2018 · PreprintMicrobiology