Author

Daisuke Kuroda

Nihon University

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Biophysics· 1 Microbiology· 1

Signature Assays, Organisms & Methods

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Approach:deep learning· 1 Approach:experimental assay· 1 Research Focus:host-pathogen & immune response· 1 Assay:metagenomics· 1 Research Focus:phylogenetics / evolution· 1 Organism:plant (other)· 1 Assay:protein structure· 1 Research Focus:protein structure prediction· 1

Frequent Co-Authors

Brian D. Weitzner· 1 shared Jarel Elgin TolentinoiD· 1 shared Jeffrey J Gray· 1 shared Jeliazko Jeliazkov· 1 shared Kei SatoiD· 1 shared Maximilian Stanley Yo· 1 shared Naireeta Biswas· 1 shared Nicholas A Marze· 1 shared

Activity by Year

2016-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 24 mutual co-author links

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1 shared paperBiophysics

Brian D. Weitzner

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2 papers

Recent·Most cited

Genetic diversity of pangolin coronaviruses reveals a key immuno-evasive substitution at spike residue 519

Maximilian Stanley Yo, Yu Kaku, Yusuke Kosugi, Jarel Elgin Tolentino, Daisuke Kuroda, Yunlong Cao, Kei Sato

The paper analyzes pangolin coronaviruses to identify a key immuno-evasive mutation at spike residue 519, similar to SARS-CoV-2, suggesting independent spillover events from bat reservoirs.

Journal of Virology · Jun 10, 2026Peer-reviewedMicrobiology

Modeling and docking antibody structures with Rosetta

Brian D. Weitzner, Jeliazko Jeliazkov, Sergey Lyskov, Nicholas A Marze, Daisuke Kuroda, Rahel Frick, Naireeta Biswas, Jeffrey J Gray

This paper describes computational protocols using Rosetta to predict antibody structures and dock antibody-protein-antigen complexes, with methods to refine loop conformations and handle model uncertainty.

bioRxiv · Aug 16, 2016Biophysics