Author

Derek Bogdanoff

University of California, San Francisco

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Bioinformatics· 1 Developmental Biology· 1 Neuroscience· 1

Signature Assays, Organisms & Methods

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Research Focus:cell type annotation· 2 Research Focus:differential expression· 2 Approach:experimental assay· 2 Organism:human· 2 Approach:statistical model· 2 Research Focus:benchmarking· 1 Assay:bulk RNA-seq· 1 Research Focus:clustering· 1

Frequent Co-Authors

David ShiniD· 2 shared Tomasz Jan NowakowskiiD· 2 shared Adib Adnan AblaiD· 1 shared Alexander M. WolffiD· 1 shared Alison M. MaxwelliD· 1 shared Andrew M. NataleiD· 1 shared Anthony J. MoussaiD· 1 shared Beatrice E. AryiD· 1 shared

Activity by Year

2018-2024 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 18 mutual co-author links

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2 shared papersNeuroscience

David ShinORCID

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Author profile →

3 papers

Recent·Most cited

High-Complexity Barcoded Rabies Virus for Scalable Circuit Mapping Using Single-Cell and Single-Nucleus Sequencing

David Shin, Madeleine E. Urbanek, H. Hanh Larson, Anthony J. Moussa, Kevin Y. Lee, Donovan L Baker, Elio Standen-Bloom, Sangeetha Ramachandran, Derek Bogdanoff, Cathryn René Cadwell, Tomasz Jan Nowakowski

The paper introduces a method to map neuronal circuits using barcoded rabies virus and single-nucleus RNA sequencing, revealing cell-type-specific circuit motifs in developing human cerebral cortex.

bioRxiv · Oct 1, 2024 · PreprintNeuroscience

Human microglia upregulate cytokine signatures and accelerate maturation of neural networks

Galina Schmunk, Chang N. Kim, Sarah S. Soliman, Matthew G. Keefe, Derek Bogdanoff, Darío Tejera, Ryan S. Ziffra, David Shin, Denise E. Allen, Bryant B. Chhun, Christopher S. McGinnis, Ethan A. Winkler, Adib Adnan Abla, Edward F. Chang, Zev J. Gartner, , Tomasz Jan Nowakowski

This study maps human microglia development and identifies cytokine-associated subtypes and functional roles in neural network maturation.

bioRxiv · Mar 24, 2020 · PreprintDevelopmental Biology

Extending Chemical Perturbations Of The Ubiquitin Fitness Landscape In A Classroom Setting

David Mavor, Kyle A. Barlow, Daniel E. Asarnow, Yuliya Birman, Derek Britain, Weilin Chen, Evan M. Green, Lillian R. Kenner, Bruk Mensa, Leanna S. Morinishi, Charlotte Nelson, Erin M. Poss, Pooja Suresh, Ruilin Tian, Taylor Arhar, , James S. Fraser

The paper uses deep mutational scanning to explore how chemical perturbations affect ubiquitin's mutational tolerance, revealing sensitization of most positions except two.

Biology Open · Jul 15, 2018Peer-reviewedBioinformatics