Author

Charlotte Nelson

University of California, San FranciscoORCID 0000-0002-3687-1102Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

Click to filter author papers

Bioinformatics· 1 Systems Biology· 1

Signature Assays, Organisms & Methods

Click to filter · or open tag

Research Focus:benchmarking· 2 Approach:deep learning· 1 Research Focus:differential expression· 1 Assay:electronic health records· 1 Approach:machine learning (classical)· 1 Assay:proteomics· 1 Approach:statistical model· 1 Research Focus:variant effect prediction· 1

Frequent Co-Authors

Alexander M. WolffiD· 1 shared Alison M. MaxwelliD· 1 shared Andrew M. NataleiD· 1 shared Atul Janardhan ButteiD· 1 shared Beatrice E. AryiD· 1 shared Bruk MensaiD· 1 shared Cole V. M. HelselliD· 1 shared Cynthia M. ChioiD· 1 shared

Activity by Year

2018-2019 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 36 mutual co-author links

Click any collaborator node to inspect or filter shared papers

Focal author (center)Selected co-authorORCID co-authorUnlinked name

Curved chords = mutual co-authorship

1 shared paperBioinformatics

Alexander M. WolffORCID

Mutual co-authors in cluster

Author profile →

2 papers

Recent·Most cited

Systems BiologyNature CommunicationsPeer-reviewedJul 10, 2019

Integrating Biomedical Research and Electronic Health Records to Create Knowledge Based Biologically Meaningful Machine Readable Embeddings

Charlotte Nelson, Atul Janardhan Butte, Sergio E. Baranzini

The paper integrates biomedical research with electronic health records to create biologically meaningful machine-readable embeddings for precision medicine.

85 citations

electronic health recordsmachine learning (classical)

𝕏 PostBluesky

BioinformaticsBiology OpenPeer-reviewedJul 15, 2018

Extending Chemical Perturbations Of The Ubiquitin Fitness Landscape In A Classroom Setting

David Mavor, Kyle A. Barlow, Daniel E. Asarnow…·James S. Fraser

The paper uses deep mutational scanning to explore how chemical perturbations affect ubiquitin's mutational tolerance, revealing sensitization of most positions except two.

25 citations

proteomicsdeep learning

𝕏 PostBluesky