Author

Derek Thirstrup

Allen Institute;

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Bioinformatics· 1

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Research Focus:clustering· 1 Approach:deep learning· 1 Assay:fluorescence / live-cell microscopy· 1 Organism:human· 1

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Amil Khan· 1 shared Antoine BorensztejniD· 1 shared Ashwin SamudreiD· 1 shared Caroline HookwayiD· 1 shared Jianxu Chen· 1 shared Matheus P VianaiD· 1 shared Suraj MishraiD· 1 shared Susanne Rafelski· 1 shared

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2026-2026 · peak 1/yr

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1 shared paperBioinformatics

Amil Khan

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1 paper

Recent·Most cited

BioinformaticsbioRxivPreprintNov 11, 2026

SubCellSeg: A generalist model for subcellular structure segmentation in 3D fluorescence microscopy

Suraj Mishra, Ashwin Samudre, Amil Khan…·Matheus P Viana

SubCellSeg is a 3D segmentation model that outperforms structure-specific models by jointly training on diverse subcellular structures and achieving zero-shot generalization.

DOI 10.64898/2026.11.10.765799

humanfluorescence / live-cell microscopy

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