Author

Dylan Baker

The Jackson Laboratory for Genomic MedicinePrimary ORCID profile (0000-0002-3495-6380 · 1 paper)Unclaimed ORCID profile · follow to get notified of new preprints

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Same name, identified by ORCID

Dylan BakeriD1 paper · University at Albany, State University of New York

Biology Disciplines

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Bioinformatics· 1 Cell Biology· 1

Signature Assays, Organisms & Methods

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Organism:human· 2 Assay:scRNA-seq· 2 Assay:spatial transcriptomics· 2 Research Focus:benchmarking· 1 Assay:bulk RNA-seq· 1 Research Focus:cell type annotation· 1 Research Focus:cell-cell communication· 1 Assay:CRISPR screen· 1

Frequent Co-Authors

Paul RobsoniD· 2 shared Alejandro PenaiD· 1 shared Bill Flynn· 1 shared Bofei YuiD· 1 shared Christopher Cahill· 1 shared Cristina Aguayo‐MazzucatoiD· 1 shared Danwei HuangfuiD· 1 shared Denis WirtziD· 1 shared

Activity by Year

2026-2026 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 31 mutual co-author links

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2 shared papersBioinformatics

Paul RobsonORCID

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2 papers

Recent·Most cited

STAR Suite: Transcriptomics processing in a single binary through AI-assisted development

Ling‐Hong Hung, Dylan Baker, Bill Flynn, Danwei Huangfu, Renhe Luo, Paul Robson, Ting Zhou, Ka Yee Yeung

Open-source STAR binary for five transcriptomic assays runs 3.9- to 6.2-fold faster than Cell Ranger 9.0.1 for scRNA-seq and Perturb-seq, 17- to 41-fold for Flex, with closely concordant counts.

bioRxiv · Sep 24, 2026 · PreprintBioinformatics✦ In-depth digest

Distinct senescent β-cell senotypes differentially drive islet aging and dysfunction

Kanako Iwasaki, Hui Pan, Jonathan M. Dreyfuss, Maya Jackson, Sergii Domanskyi, Dylan Baker, Priscila Carapeto, Christopher Cahill, Sandra Le, Francesko Hela, Juliana Alcoforado Diniz, Giray Naim Eryilmaz, Fan Wu, Pei-Hsun Wu, Bofei Yu, , Cristina Aguayo‐Mazzucato

The paper identifies two distinct senescent β-cell subpopulations with different functional roles in islet aging and dysfunction using single-cell proteomics and transcriptomics.

bioRxiv · May 28, 2026 · PreprintCell Biology