Author

F. Crispie

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Microbiology· 3

Signature Assays, Organisms & Methods

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Assay:metagenomics· 3 Research Focus:benchmarking· 2 Research Focus:cell type annotation· 2 Approach:experimental assay· 2 Research Focus:clustering· 1 Approach:deep learning· 1 Research Focus:differential expression· 1 Research Focus:genome assembly· 1

Frequent Co-Authors

P. D. Cotter· 3 shared A. H. Fitzpatrick· 1 shared A. J. McHugh· 1 shared A. M. Walsh· 1 shared A. Rupnik· 1 shared C. Feehily· 1 shared C. Hill· 1 shared C. J. Walsh· 1 shared

Activity by Year

2020-2022 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 18 mutual co-author links

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3 shared papersMicrobiology

P. D. Cotter

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Author profile →

3 papers

Recent·Most cited

Development of an amplicon-based high throughput sequencing method for genotypic characterisation of norovirus in oysters

A. H. Fitzpatrick, A. Rupnik, H. O'Shea, F. Crispie, P. D. Cotter, S. Keaveney

This paper develops and validates an amplicon-based HTS method for accurately detecting norovirus genotypes in oysters, overcoming challenges of low viral RNA concentration and mixed genotypes.

bioRxiv · Dec 23, 2022 · PreprintMicrobiology

Fermented food metagenomics reveals substrate-associated differences in taxonomy, health-associated- and antibiotic resistance-determinants

J. Leech, R. Cabrera-Rubio, A. M. Walsh, G. Macori, C. J. Walsh, W. Barton, L. Finnegan, F. Crispie, O. O'Sullivan, M. J. Claesson, P. D. Cotter

This study uses shotgun metagenomics to analyze 58 fermented foods, revealing microbial composition, functional potential, and health-associated gene clusters across different food types.

mSystems · Dec 22, 2020Peer-reviewedMicrobiology

Microbiome-based environmental monitoring of a dairy processing facility highlights the challenges associated with low microbial-load samples

A. J. McHugh, M. Yap, F. Crispie, C. Feehily, C. Hill, P. D. Cotter

This study evaluates the effectiveness of MinION and Illumina sequencing for microbial monitoring in a dairy processing facility, finding that MinION provides accurate species-level classification but requires DNA amplification due to high concentration needs.

bioRxiv · Sep 11, 2020Microbiology