Author

F. Sabot

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Evolutionary Biology· 3 Plant Biology· 3 Ecology· 1 Scientific Communication & Education· 1

Signature Assays, Organisms & Methods

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Organism:plant (other)· 5 Assay:whole-genome sequencing· 4 Approach:experimental assay· 3 Approach:statistical model· 3 Research Focus:cell type annotation· 2 Research Focus:chromatin & epigenetic regulation· 2 Research Focus:variant calling· 2 Assay:bulk RNA-seq· 1

Frequent Co-Authors

y. Vigouroux· 4 shared C. Mariac· 3 shared L. Albar· 3 shared C. Tranchant-Dubreuil· 2 shared h. Adam· 2 shared J. Tregear· 2 shared S. Jouannic· 2 shared A. Barnaud· 1 shared

Activity by Year

2016-2024 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 21 mutual co-author links

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4 shared papersPlant Biology

y. Vigouroux

Mutual co-authors in cluster

Author profile →

8 papers

Recent·Most cited

Transposable elements contribute to the evolution of host shift-related genes in cactophilic Drosophila species

D. S. d. Oliveira, A. Larue, W. V. B. Nunes, F. Sabot, A. Bodelon, M. P. G. Guerreiro, C. Vieira, C. M. Carareto

This study investigates the role of transposable elements (TEs) in host shift-related genes of cactophilic Drosophila species, finding enrichment of TEs at promoter regions and their contribution to gene expression divergence.

bioRxiv · Mar 27, 2024 · PreprintEvolutionary Biology

African rice (Oryza glaberrima) genomic introgressions impacting upon panicle architecture in Asian rice (O. sativa) lead to the identification of key QTLs

h. Adam, A. Gutierrez, M. Coudert, F. Sabot, F. Ntakirutimana, J. Serret, J. Orjuela, J. Tregear, S. Jouannic, M. Lorieux

The paper identifies QTLs associated with panicle architecture traits in Asian rice by introgressing African rice genomic segments and analyzing phenotypic variations.

bioRxiv · Apr 25, 2023 · PreprintPlant Biology

An INDEL genomic approach to explore population diversity of phytoplankton

M. Devic, L. Dennu, J.-C. Lozano, C. Mariac, V. Verge, P. Schatt, F.-Y. Bouget, F. Sabot

The paper develops an INDEL-based method to study population diversity in phytoplankton, showing it can track local dynamics through environmental DNA sampling.

bioRxiv · Feb 9, 2023Ecology

FrangiPANe, a tool for creating a panreference using left behind reads

C. Tranchant-Dubreuil, C. Chenal, M. Blaison, L. Albar, V. Klein, C. Mariac, R. A. Wing, y. Vigouroux, F. Sabot

FrangiPANe constructs a panreference genome using short reads, identifying new sequences and genes in African rice genomes.

bioRxiv · Jul 14, 2022Plant Biology

Optimization of capture protocols across species targeting up to 32000 genes and their extension to pooled DNA

C. Mariac, K. Bethune, S. Oliveira de Aquino, M. Abdelrahman, A. Barnaud, C. Billot, L. Zekraoui, M. Couderc, N. Kane, A. Carvalho Andrade, P. Marraccini, C. Kiwuka, L. Albar, F. Sabot, V. Poncet, , Y. Vigouroux

The paper optimizes hybridization capture protocols across 20 species targeting up to 32,000 genes and extends them to pooled DNA samples.

bioRxiv · Jan 10, 2022 · PreprintEvolutionary Biology

Genome wide association study pinpoints key agronomic QTLs in African rice Oryza glaberrima

P. CUBRY, H. Pidon, K. N. Ta, C. Tranchant-Dubreuil, A.-C. Thuillet, M. Holzinger, H. Adam, H. Kam, H. Chrestin, A. Ghesquiere, O. Francois, F. Sabot, Y. Vigouroux, L. Albar, S. Jouannic

This study identifies key agronomic QTLs in African rice Oryza glaberrima through a genome-wide association study, focusing on flowering time, panicle architecture, and virus resistance.

bioRxiv · Jan 7, 2020Plant Biology

The MooSciTIC project: a booster shot of science for West African research and higher education actors

M. Atindehou, K. Adeoti, L. E. Y. Loko, T. Beule, E. Paradis, G. Djedatin, T.-D. Christine, F. Sabot, L. Lagnika, E. Jaligot

The MooSciTIC project provides summer schools to enhance research skills and practices among West African scientists and educators, showing positive outcomes in a short period.

bioRxiv · Dec 28, 2018 · PreprintScientific Communication & Education

Evolutionary forces affecting synonymous variations in plant genomes

Y. Clement, G. Sarah, Y. Holtz, F. Homa, S. Pointet, S. Contreras, B. Nabholz, F. Sabot, L. Saune, M. Ardisson, R. Bacilieri, G. Besnard, A. Berger, C. Cardi, F. De Bellis, , S. Glemin

The paper investigates the evolutionary forces shaping synonymous variations in plant genomes, finding that GC-biased gene conversion is more prevalent and stronger than selection in most species.

bioRxiv · Nov 7, 2016Evolutionary Biology