Author

H. Daims

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Microbiology· 9 Ecology· 1

Signature Assays, Organisms & Methods

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Approach:experimental assay· 10 Research Focus:cell type annotation· 5 Assay:metagenomics· 4 Research Focus:host-pathogen & immune response· 3 Organism:bacteria (other)· 2 Research Focus:gene regulatory network inference· 2 Assay:whole-genome sequencing· 2 Research Focus:differential expression· 1

Frequent Co-Authors

M. Wagner· 8 shared P. Pjevac· 6 shared A. Daebeler· 4 shared C. J. Sedlacek· 4 shared C. W. Herbold· 4 shared A. J. Mueller· 3 shared K. Kitzinger· 3 shared J. R. de la Torre· 2 shared

Activity by Year

2017-2023 · peak 4/yr

Co-Author Collaboration Network

10 top collaborators · 36 mutual co-author links

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8 shared papersMicrobiology

M. Wagner

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10 papers

Recent·Most cited

Novel nitrifying symbiont lineages are vertically inherited and widespread in marine sponges

B. Glasl, H. M. Luter, K. Damjanovic, K. Kitzinger, A. J. Mueller, L. Mahler, J. P. Engelberts, L. Rix, J. T. Osvatic, B. Hausmann, J. Seneca, H. Daims, P. Pjevac, M. Wagner

This study identifies two novel nitrifying symbiont lineages in marine sponges, showing vertical transmission and suggesting their role in nitrogen cycling.

bioRxiv · Dec 23, 2023 · PreprintMicrobiology

A nitrite-oxidizing bacterium constitutively consumes atmospheric hydrogen

P. M. Leung, A. Daebeler, E. Chiri, P. R. F. Cordero, I. Hanchapola, D. L. Gillett, R. B. Schittenhelm, H. Daims, C. Greening

This study shows Nitrospira moscoviensis oxidizes atmospheric hydrogen using a high-affinity hydrogenase, enhancing its growth and survival under varying nitrite conditions.

bioRxiv · Aug 20, 2021 · PreprintMicrobiology

Ammonia-oxidizing archaea possess a wide range of cellular ammonia affinities

M.-Y. Jung, C. J. Sedlacek, K. D. Kits, A. J. Mueller, S.-K. Rhee, L. Hink, G. W. Nicol, B. Bayer, L. Lehtovirta-Morley, C. L. Wright, J. R. de la Torre, C. W. Herbold, P. Pjevac, H. Daims, M. Wagner

The paper determines ammonia oxidation kinetic properties of 12 AOA strains, finding they have a wide range of substrate affinities, challenging previous assumptions about their uniformity.

bioRxiv · Mar 2, 2021Microbiology

A refined set of rRNA-targeted oligonucleotide probes for in situ detection and quantification of ammonia-oxidizing bacteria

M. Lukumbuzya, J. M. Kristensen, K. Kitzinger, A. Pommerening-Roeser, P. H. Nielsen, M. Wagner, H. Daims, P. Pjevac

The paper develops and evaluates new highly specific 16S rRNA-targeted oligonucleotide probes for accurate detection and differentiation of ammonia-oxidizing bacteria in environmental samples.

Water Research · Nov 1, 2020Peer-reviewedMicrobiology

Sustained nitrogen loss in a symbiotic association of Comammox Nitrospira and Anammox bacteria

E. Y. Gottshall, S. J. Bryson, K. I. Cogert, M. Landreau, C. J. Sedlacek, D. A. Stahl, H. Daims, M. Winkler

The paper examines the ecological relevance of Comammox Nitrospira and Anammox bacteria coexistence by establishing synthetic communities that enable sustained nitrogen loss through dinitrogen gas production.

bioRxiv · Oct 12, 2020Ecology

Exploring the upper pH limits of nitrite oxidation: diversity, ecophysiology, and adaptive traits of haloalkalitolerant Nitrospira

A. Daebeler, K. Kitzinger, H. Koch, C. W. Herbold, M. Steinfeder, J. Schwarz, T. Zechmeister, S. M. Karst, M. Albertsen, P. H. Nielsen, M. Wagner, H. Daims

This study identifies haloalkalitolerant Nitrospira species in extreme pH lakes, revealing their diversity and adaptive traits for nitrite oxidation at high pH.

The ISME Journal · Jul 24, 2020Peer-reviewedMicrobiology

Genomic and kinetic analysis of novel Nitrospinae enriched by cell sorting

A. J. Mueller, M.-Y. Jung, C. R. Strachan, C. W. Herbold, R. H. Kirkegaard, M. Wagner, H. Daims

The paper isolates and characterizes two new Nitrospinae genera from marine environments, revealing differences in nitrite affinity and metabolic capabilities.

bioRxiv · Jun 9, 2020Microbiology

Transcriptomic response of Nitrosomonas europaea transitioned from ammonia- to oxygen-limited steady-state growth

C. J. Sedlacek, A. T. Giguere, M. D. Dobie, B. L. Mellbye, R. V. Ferrell, D. Woebken, L. Sayavedra-Soto, P. Bottomley, H. Daims, M. Wagner, P. Pjevac

This paper investigates the transcriptomic response of Nitrosomonas europaea under oxygen-limited conditions, revealing changes in gene expression related to nitrogenous gas production and oxidase activity.

bioRxiv · Sep 11, 2019Microbiology

Cultivation and genomic analysis of Candidatus Nitrosocaldus islandicus, a novel obligately thermophilic ammonia-oxidizing Thaumarchaeon

A. Daebeler, C. Herbold, J. Vierheilig, C. J. Sedlacek, P. Pjevac, M. Albersten, R. H. Kirkegaard, J. R. de la Torre, H. Daims, M. Wagner

This paper describes the cultivation and genomic analysis of a novel thermophilic ammonia-oxidizing Thaumarchaeon, revealing unique metabolic and genomic features.

bioRxiv · Dec 15, 2017Microbiology

AmoA-targeted polymerase chain reaction primers for the specific detection and quantification of comammox Nitrospira in the environment

P. Pjevac, C. Schauberger, L. Poghosyan, C. W. Herbold, M. A. H. J. van Kessel, A. Daebeler, M. Steinberger, M. S. M. Jetten, S. Lücker, M. Wagner, H. Daims

The paper develops PCR primers specifically targeting comammox Nitrospira amoA genes, enabling their detection and quantification in diverse environments with high specificity and sensitivity.

bioRxiv · Jul 8, 2017Microbiology