Author

J. Hipp

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Cancer Biology· 1 Pathology· 1

Signature Assays, Organisms & Methods

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Research Focus:benchmarking· 1 Research Focus:cell-cell communication· 1 Research Focus:clustering· 1 Research Focus:database / resource· 1 Approach:deep learning· 1 Approach:experimental assay· 1 Assay:fluorescence / live-cell microscopy· 1 Organism:human· 1

Frequent Co-Authors

Z. Zhang· 2 shared A. Raymond· 1 shared B. Gong· 1 shared B. Selvaraj· 1 shared C. E. Mason· 1 shared C. Innocenti· 1 shared C. Pedrinaci· 1 shared D. H. Farkas· 1 shared

Activity by Year

2021-2021 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 27 mutual co-author links

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2 shared papersPathology

Z. Zhang

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Author profile →

2 papers

Recent·Most cited

An Unsupervised Graph Embeddings Approach to Multiplex Immunofluorescence Image Exploration

C. Innocenti, Z. Zhang, B. Selvaraj, I. Gaffney, M. Frangos, J. Cohen-Setton, L. A. L. Dillon, M. J. Surace, C. Pedrinaci, J. Hipp, K. Baykaner

This paper introduces GraphITE, a deep learning pipeline that transforms multiplex immunofluorescence data into graph embeddings for exploratory analysis of tumor microenvironment patterns.

bioRxiv · Jun 9, 2021 · PreprintPathology

Deep oncopanel sequencing reveals fixation time- and within block position-dependent quality degradation in FFPE processed samples

Y. Zhang, T. M. Blomquist, R. Kusko, D. Stetson, Z. Zhang, L. Yin, R. Sebra, B. Gong, J. S. LoCoco, V. K. Mittal, N. Novoradovskaya, J.-Y. Yeo, N. Dominiak, J. Hipp, A. Raymond, , J. Xu

This study identifies FFPE processing errors in oncology panel sequencing by analyzing variants from technical artifacts in FFPE samples with varying fixation times and block positions.

bioRxiv · Apr 6, 2021 · PreprintCancer Biology