Author

J. T. Simpson

Ontario Institute for Cancer Research

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Cancer Biology· 1 Genomics· 1

Signature Assays, Organisms & Methods

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Organism:human· 2 Approach:statistical model· 2 Research Focus:chromatin & epigenetic regulation· 1 Research Focus:gene regulatory network inference· 1 Research Focus:phylogenetics / evolution· 1 Research Focus:variant calling· 1 Assay:whole-exome sequencing· 1 Assay:whole-genome sequencing· 1

Frequent Co-Authors

A. C. F. S. Santelli· 1 shared A. Murison· 1 shared Alexandre ChieppeiD· 1 shared Allison BlackiD· 1 shared Aluísio Augusto Cotrim SeguradoiD· 1 shared Andrew RambautiD· 1 shared Anna Sara LeviniD· 1 shared Antônio Charlys da CostaiD· 1 shared

Activity by Year

2017-2017 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 36 mutual co-author links

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1 shared paperGenomics

A. C. F. S. Santelli

Mutual co-authors in cluster

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2 papers

Recent·Most cited

Candidate cancer driver mutations in super-enhancers and long-range chromatin interaction networks

L. Wadi, L. Uuskula-Reimand, K. Isaev, S. Shuai, V. Huang, M. Liang, D. Thompson, Y. Li, L. Ruan, M. Paczkowska, M. Krassowski, I. Dzneladze, K. Kron, A. Murison, P. Mazrooei, , J. Reimand

The paper identifies 41 frequently mutated regulatory elements in cancer genomes, enriched in non-coding mutations and linked to gene expression control through chromatin interactions.

bioRxiv · Dec 19, 2017Cancer Biology

Epidemic establishment and cryptic transmission of Zika virus in Brazil and the Americas

Nuno Rodrigues Faria, Joshua Quick, Ingra Morales Claro, Julien Thézé, Jhennifer Guimarães Lourenço de Jesus, Marta Giovanetti, Moritz U. G. Kraemer, Sarah Catherine Hill, Allison Black, Antônio Charlys da Costa, L.C. Franco, Marcelo Sousa Silva, Chieh‐Hsi Wu, Jayna Raghwani, Simon Cauchemez, , Oliver G. Pybus

The paper uses ZIKV genomes to estimate the origin and spread of Zika virus in Brazil and the Americas, providing a timeframe for baseline microcephaly rates.

bioRxiv · Mar 27, 2017 · PreprintGenomics