Author

James T Elder

University of Michigan

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Bioinformatics· 1

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Research Focus:benchmarking· 1 Research Focus:differential expression· 1 Research Focus:gene regulatory network inference· 1 Assay:Hi-C· 1 Research Focus:software / tool· 1 Approach:statistical model· 1

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Gideon ShakediD· 1 shared Haihan ZhangiD· 1 shared Jiayu ZhouiD· 1 shared Johann Eli GudjonssoniD· 1 shared Lam C. TsoiiD· 1 shared Matthew T. PatrickiD· 1 shared Zhaolin ZhangiD· 1 shared

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Gideon ShakedORCID

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1 paper

Recent·Most cited

BioinformaticsNAR Genomics and BioinformaticsPeer-reviewedJul 4, 2025

Loopsim: Enrichment Analysis of ChromosomeConformation Capture with Fast EmpiricalDistribution Simulation

Gideon Shaked, Haihan Zhang, Zhaolin Zhang…·Lam C. Tsoi

Loopsim performs enrichment analysis on Hi-C loop profiles by simulating empirical null distributions to assess statistical significance of loop features.

DOI 10.1093/nargab/lqaf098

Hi-Cstatistical model

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