BioinformaticsBioinformaticsPeer-reviewed
ONTdeCIPHER: An amplicon-based nanopore sequencing pipeline for tracking pathogen variants
Emira Chérif, Fatou Thiam, Mohammad Salma…·Marine Combe
ONTdeCIPHER is a nanopore sequencing pipeline for analyzing pathogen variants, providing tools for preprocessing, variant calling, and phylogenetic analysis of SARS-CoV-2 and other pathogens.