Author

John O’Toole

Cleveland Clinic

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Bioinformatics· 1 Genomics· 1 Molecular Biology· 1

Signature Assays, Organisms & Methods

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Organism:human· 3 Approach:statistical model· 3 Research Focus:cell type annotation· 2 Approach:experimental assay· 2 Assay:scRNA-seq· 2 Assay:spatial transcriptomics· 2 Assay:ATAC-seq· 1 Approach:benchmark study· 1

Frequent Co-Authors

Daria BarwinskaiD· 3 shared Katherine J. KellyiD· 3 shared Krzysztof KirylukiD· 3 shared Michael J. FerkowicziD· 3 shared Ricardo Melo FerreiraiD· 3 shared Seth WinfreeiD· 3 shared Sushrut S. WaikariD· 3 shared Sylvia E. RosasiD· 3 shared

Activity by Year

2023-2024 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 45 mutual co-author links

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3 shared papersBioinformatics

Daria BarwinskaORCID

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Author profile →

3 papers

Recent·Most cited

BioinformaticsbioRxivPreprintNov 26, 2024

Integration of spatial multiplexed protein imaging and transcriptomics in the human kidney tracks the regenerative potential timeline of proximal tubules

Mahla Asghari, Angela R. Sabo, Daria Barwinska…·Pierre C. Dagher

1 citation

humanspatial transcriptomics

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Molecular BiologyNature CommunicationsPeer-reviewedJan 10, 2024

The chromatin landscape of healthy and injured cell types in the human kidney

Debora L. Gisch, Michelle Brennan, Blue B. Lake…·Joana P. Gonçalves

The paper defines the chromatin landscape of healthy and injured kidney cells using multi-omics data, identifying regulatory elements and transcription factor networks involved in injury response.

48 citationstop 2%

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GenomicsNaturePeer-reviewedJul 19, 2023

An atlas of healthy and injured cell states and niches in the human kidney

Blue B. Lake, Rajasree Menon, Seth Winfree…·Ljiljana Paša‐Tolić

The paper creates a high-resolution cellular atlas of healthy and injured kidney cell states and niches using single-cell and spatial technologies, identifying molecular signatures and pathways related to kidney injury.

768 citationstop 1%

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