Author

John Peters

University of Wisconsin–Madison

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Bioengineering· 1 Bioinformatics· 1

Signature Assays, Organisms & Methods

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Approach:deep learning· 1 Research Focus:development & morphogenesis· 1 Approach:experimental assay· 1 Assay:imaging· 1 Research Focus:protein design· 1 Assay:protein sequence· 1 Organism:rat· 1 Approach:transformer / foundation model· 1

Frequent Co-Authors

Adrian Marley-Weaver· 1 shared Anthony GitteriD· 1 shared Arnav SharmaiD· 1 shared Bryce JohnsoniD· 1 shared Chase R. FreschliniD· 1 shared Daniel Kim· 1 shared J Tracy Watson· 1 shared Jonathan Guevara· 1 shared

Activity by Year

2018-2025 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 21 mutual co-author links

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1 shared paperBioengineering

Adrian Marley-Weaver

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2 papers

Recent·Most cited

Biophysics-based protein language models for protein engineering

Sam Gelman, Bryce Johnson, Chase R. Freschlin, Arnav Sharma, Sameer D’Costa, John Peters, Anthony Gitter, Philip A. Romero

This paper introduces METL, a protein language model that integrates biophysical modeling with machine learning to predict protein properties and design functional variants.

Nature Methods · Sep 1, 2025Peer-reviewedBioinformatics

Systemically administered MSCs given 24hrs after osteotomy do not affect bone formation in rat distraction osteogenesis

Jonathan Guevara, Zacharie Toth, Daniel Kim, John Peters, Adrian Marley-Weaver, J Tracy Watson, Sarah McBride-Gagyi

This study investigates whether systemic administration of mesenchymal stem cells (MSCs) 24 hours after osteotomy affects bone formation in rat distraction osteogenesis, finding no significant differences in bone outcomes.

bioRxiv · Apr 2, 2018 · PreprintBioengineering