Author

L. Pipes

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Evolutionary Biology· 3 Scientific Communication & Education· 1

Signature Assays, Organisms & Methods

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Approach:statistical model· 3 Organism:virus· 3 Assay:bulk RNA-seq· 1 Research Focus:chromatin & epigenetic regulation· 1 Research Focus:database / resource· 1 Research Focus:differential expression· 1 Approach:experimental assay· 1 Assay:metagenomics· 1

Frequent Co-Authors

R. Nielsen· 3 shared H. Wang· 2 shared A. Friese· 1 shared A. G. Clark· 1 shared A. Garcia Vedrenne· 1 shared A. V. Kharlamova· 1 shared A. V. Kukekova· 1 shared A. V. Vladimirova· 1 shared

Activity by Year

2017-2020 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 17 mutual co-author links

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3 shared papersEvolutionary Biology

R. Nielsen

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Author profile →

4 papers

Recent·Most cited

Assessing uncertainty in the rooting of the SARS-CoV-2 phylogeny

L. Pipes, H. Wang, J. Huelsenbeck, R. Nielsen

This study evaluates different methods for rooting the SARS-CoV-2 phylogeny and finds they produce statistically incompatible results, suggesting caution in interpreting the origin and early spread of the virus.

Molecular Biology and Evolution · Dec 9, 2020Peer-reviewedEvolutionary Biology

Synonymous mutations and the molecular evolution of SARS-Cov-2 origins

R. Nielsen, H. Wang, L. Pipes

The paper analyzes synonymous divergence in SARS-CoV-2 to assess recombination and selection, finding evidence supporting recombination into RaTG13 and a fitness cost of non-synonymous mutations.

bioRxiv · Apr 20, 2020Evolutionary Biology

The California Environmental DNA \"CALeDNA\" Program

R. Meyer, E. E. Curd, T. Schweizer, Z. Gold, D. Ruiz Ramos, S. Shirazi, G. Kandlikar, W.-Y. Kwan, M. Lin, A. Friese, J. Moberg-Parker, M. Munguia Ramos, B. Shapiro, J. Sexton, L. Pipes, , R. Wayne

The paper describes the CALeDNA program, a community science initiative that uses environmental DNA to monitor biodiversity in California, providing public access to biodiversity data and analysis tools.

bioRxiv · Jan 4, 2019 · PreprintScientific Communication & Education

Genomic responses to selection for tame/aggressive behaviors in the silver fox (Vulpes vulpes)

X. Wang, L. Pipes, L. N. Trut, Y. Herbeck, A. V. Vladimirova, R. G. Gulevich, A. V. Kharlamova, J. L. Johnson, G. M. Acland, A. V. Kukekova, A. G. Clark

The paper identifies differentially expressed genes and SNPs associated with tame and aggressive behaviors in silver foxes.

bioRxiv · Dec 4, 2017Evolutionary Biology