A. G. Clark

This paper develops a machine learning method to infer selective sweep parameters from genetic data, accurately classifying sweep types and estimating selection coefficients.

This study shows that Tdc2 neurons in Drosophila melanogaster regulate biased sperm usage by females, with inhibition increasing first-male progeny proportion.

This paper describes three recent sex chromosome-to-autosome fusions in a Drosophila virilis strain, linking satellite DNA abundance to increased genome instability and karyotype variability.

This study evaluates fitness costs of CRISPR/Cas9 in Drosophila by tracking allele frequencies of transgenic constructs, finding moderate off-target costs but no direct Cas9 costs, with Cas9HF1 minimizing off-target effects.

The paper estimates copy number change rates in tandem repeats across mouse lines over generations, finding stability in CAG repeats and variation in other repeats.

The paper uses simulations to study how mitochondrial-nuclear sexual conflict affects hybrid incompatibility and population dynamics under different migration scenarios.

The paper examines post-mating transcriptome responses in Drosophila females mated with conspecific and heterospecific males, finding that heterospecific mating induces stress and immune-related gene expression.

The paper applies the Bradley-Terry model to Drosophila mate-choice experiments to infer sexual selection by quantifying contestant merits and predicting contest outcomes.

This study examines mitochondrial-Y chromosome epistasis in Drosophila melanogaster by analyzing longevity and gene expression across isogenic strains with different mitochondrial and Y chromosome origins.

This study shows that suppression gene drives in spatial models can lead to unstable persistence of both drive and wild-type alleles due to chasing dynamics.

This study uses pedigree and genomic data from Florida Scrub-Jays to analyze how genetic drift, selection, and gene flow influence allele frequency changes over time.

The paper develops a maximum likelihood framework to estimate fitness components in experimental evolution using Drosophila melanogaster data, finding reduced mating preference and viability for a yellow allele.

This study examines how genetic transmission asymmetries cause and resolve sexual conflicts through Mothers Curse and Fathers Curse mechanisms using analytical models and simulations.

The paper identifies differentially expressed genes and SNPs associated with tame and aggressive behaviors in silver foxes.

The paper investigates how limited dispersal in Florida Scrub-Jays shapes fine-scale genetic structure, showing stronger isolation-by-distance in males due to sex-specific dispersal patterns.

This study quantifies mutation rates and selective pressures on satellite DNA in Daphnia pulex, showing high mutation rates and evidence of purifying selection in non-MA population isolates.

The paper examines the evolutionary dynamics of male reproductive genes in Drosophila virilis subgroup species, identifying SFPs under strong selection and linked to reproductive incompatibilities.