GenomicsThe Lancet MicrobePeer-reviewed
Systematic analysis of key parameters for genomics-based real-time detection and tracking of multidrug-resistant bacteria
Claire L. Gorrie, Anders Gonçalves da Silva, Danielle J. Ingle…·Benjamin P. Howden
The paper systematically evaluates key parameters affecting SNP-based transmission inference of MDROs, finding that using a closely-related reference genome and sliding-window analysis improves accuracy.
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