A deep learning approach for improved detection of homologous recombination deficiency from shallow genomic profiles
G. Andre, T. Coletta, C. Pozzorini, A. C. Marques, J. Bieler, R. Kempfer, C. Chong, A. Saitta, E. Smith, M. Macheret, A. Janiszewski, X. Bonilla, J. Bonet, H. Santos-Silva, M. Postl, , Z. Xu
This paper introduces a deep learning model to detect homologous recombination deficiency from shallow whole genome sequencing data, achieving high accuracy comparable to deeper sequencing methods.
bioRxiv · Jul 6, 2022 · PreprintCancer Biology