Author

Masaki Nasu

University of Hawaiʻi at Mānoa

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Bioinformatics· 1 Genomics· 1

Signature Assays, Organisms & Methods

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Research Focus:benchmarking· 2 Approach:statistical model· 2 Approach:benchmark study· 1 Assay:bulk RNA-seq· 1 Assay:DNA methylation· 1 Research Focus:gene regulatory network inference· 1 Organism:human· 1 Assay:spatial transcriptomics· 1

Frequent Co-Authors

Youping DengiD· 2 shared Agata MuszyńskaiD· 1 shared Alexander BlumeiD· 1 shared Alicia AlonsoiD· 1 shared Altuna AkaliniD· 1 shared Amanda RaineiD· 1 shared Anders LundmarkiD· 1 shared Andreas SchereriD· 1 shared

Activity by Year

2020-2023 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 45 mutual co-author links

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2 shared papersBioinformatics

Youping DengORCID

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2 papers

Recent·Most cited

BioinformaticsBriefings in BioinformaticsPeer-reviewedNov 22, 2023

sRNAfrag: A pipeline and suite of tools to analyze fragmentation in small RNA sequencing data

K. Nakatsu, Mayumi Jijiwa, Vedbar S. Khadka…·Youping Deng

sRNAfrag quantifies and analyzes small RNA fragmentation across biotypes, detecting miRNA and snoRNA fragment conservation across species.

3 citations

spatial transcriptomicsbulk RNA-seq

𝕏 PostBluesky

GenomicsbioRxivPreprintDec 14, 2020

The SEQC2 Epigenomics Quality Control (EpiQC) Study: Comprehensive Characterization of Epigenetic Methods, Reproducibility, and Quantification

Jonathan Foox, Jessica Nordlund, Claudia Lalancette…·Christopher E. Mason

The paper evaluates epigenetic methods using reference materials, finding high concordance between assays and differences in performance across platforms.

2 citations

humanDNA methylation

𝕏 PostBluesky