Author

Maulik Shukla

Argonne National Laboratory

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Bioinformatics· 2

Signature Assays, Organisms & Methods

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Research Focus:benchmarking· 2 Approach:experimental assay· 2 Assay:bulk RNA-seq· 1 Assay:ChIP-seq· 1 Research Focus:clustering· 1 Research Focus:database / resource· 1 Research Focus:software / tool· 1 Research Focus:variant calling· 1

Frequent Co-Authors

Alice R. Wattam· 1 shared Andrew S. WarreniD· 1 shared Brian Brunk· 1 shared Bruno Sobral· 1 shared Chunhong Mao· 1 shared Cristina Aurrecoechea· 1 shared Daniel LawsoniD· 1 shared Deborah Hix· 1 shared

Activity by Year

2015-2021 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 45 mutual co-author links

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1 shared paperBioinformatics

Alice R. Wattam

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2 papers

Recent·Most cited

BioinformaticsMicrobiology SpectrumPeer-reviewedDec 8, 2021

Analysis of the ARTIC version 3 and version 4 SARS-CoV-2 primers and their impact on the detection of the G142D amino acid substitution in the spike protein

James J. Davis, Scott Wesley Long, Paul A. Christensen…·James M. Musser

The paper compares ARTIC V3 and V4 primer sets for SARS-CoV-2 sequencing, finding improved performance and underrepresentation of G142D substitution in early Delta genomes due to V3 primer limitations.

74 citationstop 3%

whole-genome sequencingexperimental assay

𝕏 PostBluesky

BioinformaticsBioinformaticsPeer-reviewedJan 7, 2015

RNA-Rocket: An RNA-Seq Analysis Resource for Infectious Disease Research

Andrew S. Warren, Cristina Aurrecoechea, Brian Brunk…·Bruno Sobral

RNA-Rocket provides RNA-Seq and ChIP-Seq analysis tools for infectious disease research, offering pre-indexed genomes, educational resources, and integration with bioinformatics platforms.

DOI 10.1093/bioinformatics/btv002

bulk RNA-seqChIP-seq

𝕏 PostBluesky