BioinformaticsbioRxivPreprint
StrainSeeker: fast identification of bacterial strains from unassembled sequencing reads using user-provided guide trees.
Märt Roosaare, Mihkel Vaher, Lauris Kaplinski…·Maido Remm
StrainSeeker identifies bacterial strains from unassembled sequencing reads using guide trees, successfully detecting Escherichia coli strains in mixed samples within 5 minutes.
DOI 10.1101/040261