Author

Prathima B. Nagendra

Johns Hopkins University

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Genomics· 1

Signature Assays, Organisms & Methods

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Assay:bulk RNA-seq· 1 Research Focus:clustering· 1 Research Focus:differential expression· 1 Organism:human· 1 Approach:statistical model· 1 Research Focus:trajectory inference· 1

Frequent Co-Authors

Archana BalaniD· 1 shared Elana Judith FertigiD· 1 shared Jiaying LaiiD· 1 shared Kathleen NolleriD· 1 shared Laura DeLong WoodiD· 1 shared Luciane Tsukamoto KagoharaiD· 1 shared Rachel KarchiniD· 1 shared Yi Yang· 1 shared

Activity by Year

2026-2026 · peak 1/yr

Co-Author Collaboration Network

9 top collaborators · 36 mutual co-author links

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1 shared paperGenomics

Archana BalanORCID

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1 paper

Recent·Most cited

GenomicsbioRxivPreprintJun 5, 2026

Reconstructing clone-resolved transcriptional programs from bulk tumor sequencing

Jiaying Lai, Yi Yang, Kathleen Noller…·Rachel Karchin

PICTographPlus infers clone-resolved transcriptional programs from bulk RNA-seq by integrating clonal phylogenies and proportions, achieving high accuracy in recovering clone-level expression and localizing pathway changes.

DOI 10.64898/2026.01.15.699695

humanbulk RNA-seq

𝕏 PostBluesky