Author

R. Allio

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Evolutionary Biology· 5

Signature Assays, Organisms & Methods

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Approach:statistical model· 5 Assay:bulk RNA-seq· 2 Approach:deep learning· 2 Organism:multiple species· 2 Research Focus:benchmarking· 1 Research Focus:cell type annotation· 1 Research Focus:development & morphogenesis· 1 Research Focus:genome assembly· 1

Frequent Co-Authors

F. Delsuc· 4 shared B. Nabholz· 2 shared M.-K. Tilak· 2 shared A. Comte· 1 shared A. Magdeleine· 1 shared A. Schomaker-Bastos· 1 shared A. Siberchicot· 1 shared B. de Thoisy· 1 shared

Activity by Year

2019-2024 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 17 mutual co-author links

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4 shared papersEvolutionary Biology

F. Delsuc

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5 papers

Recent·Most cited

Can ecological interactions drive evolutionary outcomes? Evidence from insect host shifts between parasitic and non-parasitic plants

B. Zelvelder, G. J. Kergoat, L. Benoit, T. Tsuchida, J. Haran, R. Allio

This study investigates host plant shifts in weevils using phylogenomic data, showing that ecological interactions between parasitic and non-parasitic plants drive evolutionary outcomes.

bioRxiv · Apr 3, 2024Evolutionary Biology

PhylteR: efficient identification of outlier sequences in phylogenomic datasets

A. Comte, T. Tricou, E. Tannier, J. Joseph, A. Siberchicot, S. Penel, R. Allio, F. Delsuc, S. Dray, D. M. de Vienne

PhylteR identifies outlier sequences in phylogenomic datasets using DISTATIS, improving gene tree concordance with species trees.

bioRxiv · Feb 2, 2023Evolutionary Biology

Transcriptomic data reveal divergent paths of chitinase evolution underlying dietary convergence in anteaters and pangolins

R. Allio, S. Teullet, D. Lutgen, A. Magdeleine, R. Koual, M.-K. Tilak, B. de Thoisy, C. A. Emerling, T. Lefebure, F. Delsuc

This study compares transcriptomic data from ant-eating mammals to show divergent chitinase evolution in pangolins and anteaters despite convergent diets.

bioRxiv · Nov 29, 2022Evolutionary Biology

High-quality carnivore genomes from roadkill samples enable species delimitation in aardwolf and bat-eared fox

R. Allio, M.-K. Tilak, C. Scornavacca, N. L. Avenant, E. Corre, B. Nabholz, F. Delsuc

This study uses roadkill samples to generate high-quality genomes for aardwolf and bat-eared fox, revealing potential species status for aardwolf subspecies and similar population histories between species.

bioRxiv · Sep 15, 2020Evolutionary Biology

MitoFinder: efficient automated large-scale extraction of mitogenomic data in target enrichment phylogenomics

R. Allio, A. Schomaker-Bastos, J. Romiguier, F. Prosdocimi, B. Nabholz, F. Delsuc

MitoFinder extracts mitogenomic data from UCE libraries, increasing ant mitogenome availability by tenfold using metagenomic assemblers.

bioRxiv · Jun 27, 2019Evolutionary Biology