Author

R. Alves

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Ecology· 2 Microbiology· 2 Biochemistry· 1 Cell Biology· 1 Pathology· 1

Signature Assays, Organisms & Methods

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Research Focus:cell type annotation· 4 Organism:human· 4 Approach:statistical model· 4 Research Focus:clustering· 3 Research Focus:differential expression· 2 Research Focus:ecology & biodiversity· 2 Approach:experimental assay· 2 Assay:imaging· 2

Frequent Co-Authors

A. Telzerow· 2 shared M. Kuhn· 2 shared P. Bork· 2 shared R. Hercog· 2 shared A. B. Fogo· 1 shared A. Figueiredo· 1 shared A. Fullam· 1 shared A. I. Gomez-Varela· 1 shared

Activity by Year

2018-2024 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 14 mutual co-author links

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Curved chords = mutual co-authorship

2 shared papersMicrobiology

A. Telzerow

Mutual co-authors in cluster

Author profile →

7 papers

Recent·Most cited

ComPRePS: Unlocking Scalable AI Analysis for Computational Renal Pathology

A. S. Paul, L. A. Rodrigues, S. Katari Chaluva Kumar, D. Manthey, S. Boarder, C. Pardinhas, C. Pimenta, V. Sousa, A. Figueiredo, R. Alves, B. A. Santo, W. Dunklin, S. Devarasetty, H. Abdelazim, A. B. Fogo, , P. Sarder

ComPRePS improves renal pathology analysis by automating WSI processing and AI-assisted interpretation, enhancing precision and interobserver agreement in key lesion assessments.

bioRxiv · Mar 21, 2024 · PreprintPathology

Body size-dependent effects on the distribution patterns of phoretic mites of the multi-symbiont Rhynchophorus ferrugineus (Olivier, 1790) host

I. Matos, D. Silva, J. Oliveira, C. Goncalves, R. Alves, N. Pereira, F. Catarino, O. M. C. C. Ameixa, J. A. Sousa, L. F. Rangel, M. J. Santos, C. AYRA-PARDO

This study examines how body size affects the distribution of phoretic mites on red palm weevils across different regions and body parts, finding that larger mites dominate and smaller ones coexist with them.

bioRxiv · Feb 6, 2023 · PreprintEcology

Consistency across multi-omics layers in a drug-perturbed gut microbial community

S. Wuyts, R. Alves, M. Zimmermann-Kogadeeva, S. Nishijima, S. Blasche, M. Driessen, P. E. Geyer, R. Hercog, E. Kartal, L. Maier, J. B. Müller, S. Garcia Santamarina, T. S. B. Schmidt, D. C. Sevin, A. Telzerow, , P. Bork

The paper examines consistency and complementarity across five omics layers in a drug-perturbed gut microbial community, finding high agreement in species abundance and functional insights from different data types.

bioRxiv · Jan 3, 2023Microbiology

C. difficile may be overdiagnosed in adults and is a prevalent commensal in infants

P. Ferretti, J. Wirbel, O. M. Maistrenko, T. Van Rossum, R. Alves, A. Fullam, W. Akanni, C. Schudoma, A. Schwarz, R. Thielemann, L. Thomas, S. Kandels, R. Hercog, A. Telzerow, I. Letunic, , P. Bork

This study finds that C. difficile is often overdiagnosed in adults and is a common commensal in infants, with distinct microbial associations across age groups.

bioRxiv · Feb 16, 2022 · PreprintMicrobiology

Combining genotype, phenotype, and environmental data to delineate site-adjusted provenance strategies for ecological restoration

C. d. S. Carvalho, B. R. Forester, S. K. Mitre, R. Alves, V. L. Imperatriz-Fonseca, S. J. Ramos, L. C. Resende-Moreira, J. O. Siqueira, L. C. Trevelin, C. F. Caldeira, M. Gastauer, R. Jaffe

The paper develops a landscape genomic approach to guide site-adjusted provenancing strategies for ecological restoration by integrating genotype, phenotype, and environmental data.

bioRxiv · Dec 11, 2019Ecology

Simultaneous 3D super-resolution fluorescence microscopy and atomic force microscopy: combined SIM and AFM platform for cell imaging

A. I. Gomez-Varela, D. R. Stamov, A. Miranda, R. Alves, C. Barata-Antunes, D. Dambournet, D. G. Drubin, S. Paiva, P. A. A. De Beule

This paper introduces a combined SIM and AFM platform for simultaneous 3D super-resolution fluorescence and atomic force microscopy, enabling spatially correlated imaging of cells without cell-to-cell variation.

bioRxiv · May 17, 2019Cell Biology

Febrile temperatures increase in vitro antibody affinity for malaria and dengue antigens

R. Stan, K. Francoso, R. Alves, L. C. Ferreira, I. Soares, M. M. d. Camargo

The paper shows that febrile temperatures increase antibody-antigen binding affinity in vitro, suggesting a potential adaptive role for fever in enhancing immune responses.

bioRxiv · Jun 12, 2018Biochemistry