EcologybioRxiv
Identifying likely transmission pairs with pathogen sequence data using Kolmogorov Forward Equations; an application to M.bovis in cattle and badgers
G. Rossi, J. Crispell, D. Balaz…·R. R. Kao
The paper develops an analytical method to infer transmission probabilities between hosts using low-diversity pathogen sequence data and sampling times, applied to M. bovis in cattle and badgers.
DOI 10.1038/s41598-020-78900-3