R. Props

Real-Time Flow Cytometry to assess qualitative and quantitative responses of oral pathobionts during exposure to antiseptics

This study uses real-time flow cytometry to rapidly assess the quantitative and qualitative responses of oral bacteria to antiseptics and identifies treatment-specific phenotypic subpopulations.

Triangulation of microbial fingerprinting in anaerobic digestion reveals consistent fingerprinting profiles

This study compares four microbial fingerprinting methods in anaerobic digestion, finding that cytometric fingerprinting via flow cytometry provides reliable and fast holistic monitoring, while other methods offer complementary insights.

Predicting the presence and abundance of bacterial taxa in environmental communities through flow cytometric fingerprinting

The paper develops a computational pipeline using flow cytometry and 16S rRNA gene amplicon sequencing to predict bacterial taxa presence and abundance in environmental communities.

Rearing water microbiomes in white leg shrimp (Litopenaeus vannamei) larviculture assemble stochastically and are influenced by the microbiomes of live feed products

This study examines the stochastic assembly of rearing water microbiomes in shrimp larviculture and quantifies the contribution of live and dry feed microbiomes to these communities.

PhenoGMM: Gaussian mixture modelling of microbial cytometry data enables efficient predictions of biodiversity

PhenoGMM uses Gaussian Mixture Models to predict microbial diversity from flow cytometry data, integrating with 16S rRNA sequencing for improved accuracy.

Temperature and nutrient gradients correspond with lineage-specific microdiversification in the ubiquitous and abundant Limnohabitans freshwater genus

The paper investigates genomic diversity in Limnohabitans, a freshwater bacterium, and finds that temperature and nutrient levels drive microdiversification, with distinct strains adapted to different environmental conditions.

Short-term supplementation of celecoxib shifted butyrate production and ameliorated inflammation on a simulated model of the gut microbial ecosystem

This study shows that short-term celecoxib exposure alters gut microbiota metabolism and reduces inflammation in simulated gut models.

Microhabitats shape diversity-productivity relationships in freshwater bacterial communities

The paper examines how microhabitats influence diversity-productivity relationships in freshwater bacterial communities, finding that particle-associated habitats show strong positive correlations between diversity and productivity.

Cytometric fingerprints of gut microbiota predict Crohn’s disease state

The paper shows that flow cytometry can classify Crohn’s disease samples based on gut microbiota changes, matching 16S rRNA gene analysis results.

Discriminating bacterial phenotypes at the population and single-cell level: a comparison of flow cytometry and Raman spectroscopy fingerprinting

This paper compares flow cytometry and Raman spectroscopy for analyzing bacterial phenotypic heterogeneity, showing flow cytometry's population-level resolution and Raman's single-cell biochemical detail.

Randomized lasso associates freshwater lake-system specific bacterial taxa with heterotrophic production through flow cytometry

The paper uses machine learning to link bacterial taxa with heterotrophic production in freshwater lakes using flow cytometry and 16S rRNA data.

Coculturing bacteria leads to reduced phenotypic heterogeneities

This study shows that coculturing bacteria reduces their individual phenotypic heterogeneity, suggesting that community composition influences taxon-specific diversity.