Author

V. J. Denef

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Microbiology· 3 Ecology· 2

Signature Assays, Organisms & Methods

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Assay:metagenomics· 4 Approach:statistical model· 3 Organism:bacteria (other)· 2 Research Focus:cell type annotation· 2 Research Focus:benchmarking· 1 Research Focus:clustering· 1 Research Focus:database / resource· 1 Research Focus:differential expression· 1

Frequent Co-Authors

R. Props· 3 shared B. A. Biddanda· 2 shared J. T. Evans· 2 shared M. L. Schmidt· 2 shared A. D. Weinke· 1 shared C. C. Zwiers· 1 shared C. E. Yancey· 1 shared C. Polik· 1 shared

Activity by Year

2019-2022 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 21 mutual co-author links

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Curved chords = mutual co-authorship

3 shared papersEcology

R. Props

Mutual co-authors in cluster

Author profile →

5 papers

Recent·Most cited

The Western Lake Erie Culture Collection: A promising resource for evaluating the physiological and genetic diversity of Microcystis and its associated microbiome

C. E. Yancey, E. A. Kiledal, V. J. Denef, R. M. Errera, J. T. Evans, L. Hart, D. Isailovic, W. James, J. J. Kharbush, J. A. Kimbrel, W. Li, X. Mayali, H. Nitschky, C. Polik, M. A. Powers, , G. J. Dick

The paper isolates and sequences 21 Microcystis cultures from Lake Erie, revealing genomic diversity and toxin production variability, along with associated bacterial communities.

bioRxiv · Oct 21, 2022Microbiology

To dereplicate or not to dereplicate?

J. T. Evans, V. J. Denef

The paper examines redundancy in metagenome-assembled genomes and evaluates dereplication tools to address repeated sampling issues.

mSphere · Jun 24, 2020Peer-reviewedMicrobiology

Temperature and nutrient gradients correspond with lineage-specific microdiversification in the ubiquitous and abundant Limnohabitans freshwater genus

R. Props, V. J. Denef

The paper investigates genomic diversity in Limnohabitans, a freshwater bacterium, and finds that temperature and nutrient levels drive microdiversification, with distinct strains adapted to different environmental conditions.

Applied and Environmental Microbiology · May 5, 2020Peer-reviewedMicrobiology

Microhabitats shape diversity-productivity relationships in freshwater bacterial communities

M. L. Schmidt, B. A. Biddanda, A. D. Weinke, E. Chiang, F. Januska, R. Props, V. J. Denef

The paper examines how microhabitats influence diversity-productivity relationships in freshwater bacterial communities, finding that particle-associated habitats show strong positive correlations between diversity and productivity.

bioRxiv · Sep 29, 2019 · PreprintEcology

Randomized lasso associates freshwater lake-system specific bacterial taxa with heterotrophic production through flow cytometry

P. Rubbens, M. L. Schmidt, R. Props, B. A. Biddanda, N. Boon, W. Waegeman, V. J. Denef

The paper uses machine learning to link bacterial taxa with heterotrophic production in freshwater lakes using flow cytometry and 16S rRNA data.

bioRxiv · Feb 16, 2019 · PreprintEcology