Author

S. Benjamin

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Evolutionary Biology· 3

Signature Assays, Organisms & Methods

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Organism:Drosophila· 3 Assay:ATAC-seq· 2 Research Focus:cell type annotation· 2 Research Focus:chromatin & epigenetic regulation· 2 Research Focus:gene regulatory network inference· 2 Assay:bulk RNA-seq· 1 Approach:deep learning· 1 Research Focus:differential expression· 1

Frequent Co-Authors

L. Zhao· 3 shared N. Svetec· 3 shared E. Witt· 2 shared A. Gadau· 1 shared E. B. Zheng· 1 shared S. Khodursky· 1 shared S. M. Durkin· 1 shared X. Wu· 1 shared

Activity by Year

2019-2023 · peak 1/yr

Co-Author Collaboration Network

8 top collaborators · 23 mutual co-author links

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3 shared papersEvolutionary Biology

L. Zhao

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3 papers

Recent·Most cited

The evolution and mutational robustness of chromatin accessibility in Drosophila

S. Khodursky, E. B. Zheng, N. Svetec, S. M. Durkin, S. Benjamin, A. Gadau, X. Wu, L. Zhao

This study uses deep neural networks to analyze chromatin accessibility in Drosophila, showing sequence determinants are conserved and accessibility is mutationally robust yet malleable under selection.

bioRxiv · Jun 26, 2023 · PreprintEvolutionary Biology

Transcription factors drive opposite relationships between gene age and tissue specificity in male and female Drosophila gonads

E. Witt, N. Svetec, S. Benjamin, L. Zhao

The paper shows that gene age and tissue specificity differ between male and female Drosophila gonads, with older genes being more ovary-biased and younger genes more testis-biased.

bioRxiv · Dec 9, 2020Evolutionary Biology

Testis single-cell RNA-seq reveals the dynamics of de novo gene transcription and germline mutational bias in Drosophila

E. Witt, S. Benjamin, N. Svetec, L. Zhao

This study uses single-cell RNA-seq to analyze de novo gene expression and mutational patterns in Drosophila testis across spermatogenesis.

bioRxiv · Jul 2, 2019Evolutionary Biology