Author

T. Chari

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Biophysics· 2

Signature Assays, Organisms & Methods

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Research Focus:clustering· 2 Research Focus:benchmarking· 1 Assay:bulk RNA-seq· 1 Approach:deep learning· 1 Research Focus:gene regulatory network inference· 1 Assay:scRNA-seq· 1 Approach:statistical model· 1 Research Focus:trajectory inference· 1

Frequent Co-Authors

G. Gorin· 2 shared L. Pachter· 2 shared M. Fang· 1 shared M. T. Carilli· 1 shared Y. Choi· 1 shared

Activity by Year

2022-2023 · peak 1/yr

Co-Author Collaboration Network

5 top collaborators · 8 mutual co-author links

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2 shared papersBiophysics

G. Gorin

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2 papers

Recent·Most cited

Biophysical modeling with variational autoencoders for bimodal, single-cell RNA sequencing data

M. T. Carilli, G. Gorin, Y. Choi, T. Chari, L. Pachter

The paper introduces biVI, a variational autoencoder for bimodal single-cell RNA sequencing data, which models biophysical processes to capture cell type structure and parameter values.

bioRxiv · Jan 13, 2023Biophysics

RNA velocity unraveled

G. Gorin, M. Fang, T. Chari, L. Pachter

This paper analyzes RNA velocity methods, evaluates their assumptions, and proposes a framework for Markovian analysis to improve their accuracy and reliability.

bioRxiv · Feb 12, 2022Biophysics