Author

T. Katoh

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Evolutionary Biology· 2 Microbiology· 1

Signature Assays, Organisms & Methods

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Organism:Drosophila· 2 Research Focus:phylogenetics / evolution· 2 Approach:statistical model· 2 Assay:whole-genome sequencing· 2 Research Focus:cell type annotation· 1 Research Focus:clustering· 1 Approach:deep learning· 1 Approach:experimental assay· 1

Frequent Co-Authors

A. Kopp· 2 shared M. J. Toda· 2 shared T. Werner· 2 shared A. A. Comeault· 1 shared A. B. Carvalho· 1 shared A. Gotoh· 1 shared A. Suvorov· 1 shared A. Takahashi· 1 shared

Activity by Year

2020-2023 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 23 mutual co-author links

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2 shared papersEvolutionary Biology

A. Kopp

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Author profile →

3 papers

Recent·Most cited

Single-fly assemblies fill major phylogenomic gaps across the Drosophilidae Tree of Life

B. Y. Kim, H. R. Gellert, S. H. Church, A. Suvorov, S. S. Anderson, O. Barmina, S. G. Beskid, A. A. Comeault, K. N. Crown, S. E. Diamond, S. Dorus, T. Fujichika, J. A. Hemker, J. Hrcek, M. Kankare, , D. A. Petrov

The paper presents 183 new genome assemblies for 179 drosophilid species using single-fly long-read sequencing, improving phylogenomic coverage and enabling a well-resolved multi-locus phylogeny.

bioRxiv · Oct 2, 2023 · PreprintEvolutionary Biology

DrosoPhyla: genomic resources for drosophilid phylogeny and systematics

C. Finet, V. A. Kassner, A. B. Carvalho, H. Chung, J. P. Day, E. K. Delaney, F. C. De Re, H. D. Dufour, E. Dupim, H. F. Izumitani, T. B. Gauterio, J. Justen, T. Katoh, A. Kopp, S. Koshikawa, , F. Marletaz

The paper develops genomic markers and constructs phylogenetic trees for 704 Drosophilidae species to clarify evolutionary relationships and resolve taxonomic uncertainties.

bioRxiv · Mar 23, 2021 · PreprintEvolutionary Biology

Butyrate producing Clostridiales utilize distinct human milk oligosaccharides correlating to early colonization and prevalence in the human gut

M. J. Pichler, C. Yamada, B. Shuoker, C. Alvarez-Silva, A. Gotoh, M. L. Leth, E. Schoof, T. Katoh, M. Sakanaka, T. Katayama, C. Jin, N. G. Karlsson, M. Arumugam, S. Fushinobu, M. Abou Hachem

The paper identifies HMO utilization pathways in Roseburia and Eubacterium that enable co-growth with Akkermansia muciniphilia and highlight distinct HMO utilization phylotypes in the early gut microbiota.

bioRxiv · Apr 15, 2020 · PreprintMicrobiology