Author

Verena Laupert

Max Planck Institute for Molecular Genetics

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Bioinformatics· 1 Developmental Biology· 1 Genetics· 1

Signature Assays, Organisms & Methods

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Assay:bulk RNA-seq· 3 Research Focus:gene regulatory network inference· 3 Research Focus:differential expression· 2 Approach:experimental assay· 2 Organism:mouse· 2 Approach:statistical model· 2 Research Focus:cell type annotation· 1 Assay:ChIP-seq· 1

Frequent Co-Authors

Cesar A. Prada‐MedinaiD· 2 shared Christina PaliouiD· 2 shared Lars WittleriD· 2 shared Mai H.Q. Phan· 2 shared Martin VingroniD· 2 shared Robert Schöpflin· 2 shared Stefan MundlosiD· 2 shared Alessa R. RingeliD· 1 shared

Activity by Year

2021-2025 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 45 mutual co-author links

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2 shared papersDevelopmental Biology

Cesar A. Prada‐MedinaORCID

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3 papers

Recent·Most cited

Enhancer adoption by an LTR retrotransposongenerates viral-like particles causingdevelopmental limb phenotypes

Juliane Glaser, Giulia Cova, Beatrix Fauler, Cesar A. Prada‐Medina, Virginie Stanislas, Mai H.Q. Phan, Robert Schöpflin, Yasmin Aktas, Martin Franke, Guillaume Andrey, Natalia Bartzoka, Christina Paliou, Verena Laupert, Wing-Lee Chan, Lars Wittler, , Stefan Mundlos

The paper shows that activation of an LTR retrotransposon in the embryo leads to viral-like particle production, causing limb malformations through apoptotic cell death.

Nature Genetics · Jul 1, 2025Peer-reviewedDevelopmental Biology

CENTRE: A gradient boosting algorithm for Cell-type-specific ENhancer-Target pREdiction

Trisevgeni Rapakoulia, Sara Lopez Ruiz De Vargas, Persia Akbari Omgba, Verena Laupert, Igor Ulitsky, Martin Vingron

CENTRE predicts cell-type-specific enhancer-target interactions using gene expression and ChIP-seq data, outperforming methods requiring extensive experimental data.

Bioinformatics · Nov 1, 2023Peer-reviewedBioinformatics

Promoter repression and 3D-restructuring resolves divergent developmental gene expression in TADs

Alessa R. Ringel, Quentin Szabo, Andrea M. Chiariello, Konrad Chudzik, Robert Schöpflin, Patricia Rothe, Alexandra L. Mattei, Tobias Zehnder, Dermot Harnett, Verena Laupert, Simona Bianco, Sara Hetzel, Mai H.Q. Phan, Magdalena Schindler, Daniel M. Ibrahim, , Michael I. Robson

The paper shows that divergent gene expression within TADs is resolved through TAD restructuring and DNA methylation, not enhancer-promoter compatibility or position.

bioRxiv · Oct 8, 2021 · PreprintGenetics