Author

Mario Morgenstern

University Hospital of BaselORCID 0000-0001-5108-0731Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Microbiology· 3

Signature Assays, Organisms & Methods

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Organism:human· 3 Approach:experimental assay· 2 Research Focus:host-pathogen & immune response· 2 Research Focus:cell type annotation· 1 Assay:imaging· 1 Assay:metagenomics· 1 Approach:microscopy & imaging analysis· 1 Assay:proteomics· 1

Frequent Co-Authors

Aya IizukaiD· 3 shared Benedict MoriniD· 3 shared Dirk BumanniD· 3 shared Martin ClaussiD· 3 shared Nina KhannaiD· 3 shared Pablo Rivera‐FuentesiD· 3 shared Richard KüehliD· 3 shared Vishwachi TripathiiD· 3 shared

Activity by Year

2024-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 45 mutual co-author links

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3 shared papersMicrobiology

Aya IizukaORCID

Mutual co-authors in cluster

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3 papers

Recent·Most cited

MicrobiologybioRxivPreprintJun 3, 2026

Persistent Staphylococcus aureus in human musculoskeletal tissues despite targeted antibiotic therapy

Benedict Morin, Vishwachi Tripathi, Anne-Kathrin Woischnig…·Nina Khanna

This study shows S. aureus persists in musculoskeletal tissues despite antibiotic therapy, with residual bacteria capable of causing relapse.

DOI 10.64898/2026.06.03.728378

humanmetagenomics

𝕏 PostBluesky

MicrobiologybioRxivPreprintSep 12, 2025

Microgeography of staphyloccoci in human tissue explains antibiotic failure

Vishwachi Tripathi, Benedict Morin, Minia Antelo-Varela…·Dirk Bumann

The paper maps Staphylococcus aureus microgeography in human tissue using AI-guided imaging and finds antibiotic failure is linked to intracellular bacterial persistence and metabolic constraints.

5 citations

humanproteomics

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MicrobiologyACS Infectious DiseasesPeer-reviewedApr 17, 2024

A Far-Red Fluorescent Probe to Visualize Staphylococcus aureus in Patient Samples

Krittapas Jantarug, Vishwachi Tripathi, Benedict Morin…·Pablo Rivera‐Fuentes

The paper develops a far-red fluorescent probe to visualize Staphylococcus aureus in human tissue samples, demonstrating its effectiveness in multiple imaging applications.

7 citations

𝕏 PostBluesky