Author

Xavier Farré

ORCID 0000-0001-8702-4643Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Approach:deep learning· 2 Assay:imaging· 2 Research Focus:cell type annotation· 1 Research Focus:differential expression· 1 Organism:human· 1 Assay:spatial transcriptomics· 1

Frequent Co-Authors

Anant MadabhushiiD· 2 shared Jonathan T.C. LiuiD· 2 shared Kevin W. BishopiD· 2 shared Lawrence D. TrueiD· 2 shared Michelle R. DownesiD· 2 shared Rui WangiD· 2 shared Andrew H. SongiD· 1 shared David BrenesiD· 1 shared

Activity by Year

2025-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 42 mutual co-author links

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2 shared papersPathology

Anant MadabhushiORCID

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2 papers

Recent·Most cited

PathologyModern PathologyPeer-reviewedFeb 14, 2026

Detection of prostate cancer in 3D pathology datasets via generative immunolabeling

Robert Serafin, Jennifer Salguero López, SP Chow…·Jonathan T.C. Liu

This paper develops a 3D computational pipeline called SIGHT to detect prostate cancer in pathology datasets using generative immunolabeling, achieving an F1 score comparable to pathologist agreement.

1 citation

humanspatial transcriptomics

𝕏 PostBluesky

PathologybioRxivPreprintJul 20, 2025

Deep-learning triage of 3D pathology datasets for comprehensive and efficient pathologist assessments

Gan Gao, Renao Yan, Andrew H. Song…·Jonathan T.C. Liu

CARP3D uses deep learning to prioritize high-risk 2D sections in 3D pathology data, improving disease detection while reducing pathologist workload.

6 citations

imagingdeep learning

𝕏 PostBluesky