Author

Sachi Krishna

Broad InstituteORCID 0000-0002-7457-9700Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Assay:spatial transcriptomics· 2 Approach:benchmark study· 1 Research Focus:benchmarking· 1 Research Focus:cell type annotation· 1 Research Focus:cell-cell communication· 1 Research Focus:differential expression· 1 Approach:experimental assay· 1 Organism:human· 1

Frequent Co-Authors

Samouil L. FarhiiD· 2 shared Anna H. YeatoniD· 1 shared Brittany A. GoodsiD· 1 shared Cameron Y. ParkiD· 1 shared Catherine J. WuiD· 1 shared Ce GaoiD· 1 shared Chanell MangumiD· 1 shared Crystal S. ShiniD· 1 shared

Activity by Year

2025-2025 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 27 mutual co-author links

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2 shared papersCancer Biology

Samouil L. FarhiORCID

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2 papers

Recent·Most cited

Cancer BiologyNature CommunicationsPeer-reviewedNov 20, 2025

Systematic benchmarking of imaging spatial transcriptomics platforms in FFPE tissues

Huan Wang, Ruixu Huang, Jack Nelson…·Samouil L. Farhi

This study benchmarks three imaging spatial transcriptomics platforms on FFPE tissues, finding 10x Xenium has higher transcript counts without sacrificing specificity, while all platforms align with RNA-seq data but vary in performance metrics.

139 citationstop 1%

spatial transcriptomicsbenchmark study

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Cancer BiologyScience ImmunologyPeer-reviewedJan 24, 2025

Coordinated Immune Cell Networks in the Bone Marrow Microenvironment Define the Graft versus Leukemia Response with Adoptive Cellular Therapy

Katie Maurer, Cameron Y. Park, Shouvik Mani…·Elham Azizi

The paper analyzes single-cell data from bone marrow samples to identify immune cell interactions that predict response to adoptive cellular therapy in myeloid leukemia.

42 citationstop 1%

humanscRNA-seq

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