Author

Azadeh Seidi

AGRF LtdORCID 0000-0002-8024-8633Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Assay:scRNA-seq· 2 Approach:benchmark study· 1 Research Focus:benchmarking· 1 Research Focus:dimensionality reduction· 1 Organism:human· 1 Approach:statistical model· 1

Frequent Co-Authors

Daniela Amann‐ZalcensteiniD· 2 shared Luyi TianiD· 2 shared Matthew E. RitchieiD· 2 shared Shalin H. NaikiD· 2 shared Shian SuiD· 2 shared Xueyi DongiD· 2 shared Abolfazl JalalAbadi· 1 shared Christine BibeniD· 1 shared

Activity by Year

2018-2019 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 41 mutual co-author links

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2 shared papersBioinformatics

Daniela Amann‐ZalcensteinORCID

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2 papers

Recent·Most cited

BioinformaticsNature MethodsPeer-reviewedMay 27, 2019

scRNA-seq mixology: towards better benchmarking of single cell RNA-seq analysis methods

Luyi Tian, Xueyi Dong, Saskia Freytag…·Matthew E. Ritchie

The paper benchmarks scRNA-seq analysis methods using synthetic datasets generated from mixed cancer cell lines, identifying methods that perform well across tasks like normalization, clustering, and integration.

346 citationstop 1%

humanscRNA-seq

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BioinformaticsPLoS Computational BiologyPeer-reviewedAug 10, 2018

scPipe: a flexible R/Bioconductor preprocessing pipeline for single-cell RNA-sequencing data

Luyi Tian, Shian Su, Xueyi Dong…·Matthew E. Ritchie

scPipe provides a flexible R/Bioconductor pipeline for preprocessing scRNA-seq data, handling multiple barcoding strategies and generating quality reports for downstream analysis.

117 citationstop 3%

scRNA-seqstatistical model

𝕏 PostBluesky