GenomicsbioRxivPreprint
OxBreaker: species-agnostic pipeline for the analysis of outbreaks using nanopore sequencing
Carlos Reding, Katie M.V. Hopkins, Matthew Colpus…·Bernadette Young
OxBreaker is a species-agnostic pipeline for analyzing bacterial and plasmid outbreaks using nanopore sequencing, offering high accuracy and accessibility for real-time genomic surveillance.
DOI 10.64898/2026.03.18.709804