Author

Franco Pagotto

Health CanadaORCID 0000-0003-2303-3158Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Approach:statistical model· 2 Research Focus:variant calling· 2 Assay:whole-genome sequencing· 2 Organism:bacteria (other)· 1 Research Focus:gene regulatory network inference· 1 Organism:human· 1

Frequent Co-Authors

Aleisha R. ReimeriD· 1 shared Alexander GmeineriD· 1 shared Anders Hauge Okholm· 1 shared Andrea J. EtteriD· 1 shared Annette FagerlundiD· 1 shared Ariane Tatjana PietzkaiD· 1 shared Bojan PapićiD· 1 shared C. F. L. AmariD· 1 shared

Activity by Year

2017-2025 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 29 mutual co-author links

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1 shared paperBioinformatics

Aleisha R. ReimerORCID

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2 papers

Recent·Most cited

MicrobiologyApplied and Environmental MicrobiologyPeer-reviewedMar 4, 2025

Large-scale phenotypic and genomic characterization of Listeria monocytogenes susceptibility to quaternary ammonium compounds

Mirena Ivanova, Martin Laage Kragh, Judit Szarvas…·Pimlapas Leekitcharoenphon

This study characterizes QAC susceptibility in 1,671 L. monocytogenes isolates, identifies genetic markers linked to tolerance, and examines global prevalence across 37,897 genomes.

17 citationstop 4%

humanwhole-genome sequencing

𝕏 PostBluesky

BioinformaticsNucleic Acids ResearchPeer-reviewedAug 1, 2017

Neptune: A Bioinformatics Tool for Rapid Discovery of Genomic Variation in Bacterial Populations

Eric Marinier, Rahat Zaheer, Chrystal L. Berry…·Gary Van Domselaar

Neptune identifies differentially abundant genomic loci in bacterial populations using k-mer matching and probabilistic models, showing sensitivity and specificity on simulated and real data.

22 citations

bacteria (other)whole-genome sequencing

𝕏 PostBluesky