Flexible and efficient simulation-based inference for models of decision-making
Jan BoeltsiD, Jan-Matthis LueckmanniD, Richard GaoiD, Jakob H. MackeiD
Abstract
Inferring parameters of computational models that capture experimental data is a central task in cognitive neuroscience. Bayesian statistical inference methods usually require the ability to evaluate the likelihood of the model--however, for many models of interest in cognitive neuroscience, the associated likelihoods cannot be computed effciently. Simulation-based inference (SBI) offers a solution to this problem by only requiring access to simulations produced by the model. Here, we provide an effcient SBI method for models of decision-making. Our approach, Mixed Neural Likelihood Estimation (MNLE), trains neural density estimators on model simulations to emulate the simulator, and is designed to capture both the continuous (e.g., reaction times) and discrete (choices) data of decision-making models. The likelihoods of the emulator can then be used to perform Bayesian parameter inference on experimental data using standard approximate inference methods like Markov Chain Monte Carlo sampling. We demonstrate MNLE on two variants of the drift-diffusion model (DDM) and compare its performance to a recently proposed method for SBI on DDMs, called Likelihood Approximation Networks (LANs, Fengler et al. 2021). We show that MNLE is substantially more effcient than LANs: it achieves similar likelihood accuracy with six orders of magnitude fewer training simulations, and is substantially more accurate than LANs when both are trained with the same budget. This enables researchers to train MNLE on custom-tailored models of decision-making, leading to fast iteration of model design for scientific discovery.
02 /Specification & Classification
Click any tag to browse matching papers- Citations
- 50
- FWCI
- 7.56
- Field percentile
- top 2%
- Research Focus
- Approach
Reproducibility ledger
Nobody has reported trying to reproduce this paper yet. Did you replicate an experiment or run the code? Your report saves the next lab a week.
Sign in to file a reproducibility report.
Related papers
- Likelihood Approximation Networks (LANs) for Fast Inference of Simulation Models in Cognitive Neuroscience
Alexander Fengler, Lakshmi Narasimhan Govindarajan, … Michael J. Frank·eLifePeer-reviewed·Apr 6, 2021
- Methods and considerations for estimating parameters in biophysically detailed neural models with simulation based inference
Nicholas M. Tolley, Pedro Luiz Coelho Rodrigues, … Stephanie R. Jones·PLoS Computational BiologyPeer-reviewed·Feb 26, 2024
- Fitting drift-diffusion decision models to trial-by-trial data
Q. Feltgen, J. Daunizeau·bioRxiv·Jan 30, 2020
- Computational cognitive neuroscience: Model fitting should not replace model simulation.
Stefano Palminteri, Valentin Wyart, Étienne Koechlin·Trends in Cognitive SciencesPeer-reviewed·May 2, 2017
- Training deep neural density estimators to identify mechanistic models of neural dynamics
Pedro J. Gonçalves, Jan-Matthis Lueckmann, … Jakob H. Macke·eLifePeer-reviewed·Sep 17, 2020
- Approximate Bayesian Inference for a Mechanistic Model of Vesicle Release at a Ribbon Synapse
Cornelius Schröder, Ben James, … Philipp Berens·bioRxiv·Sep 30, 2019