High-performance pipeline for MutMap and QTL-seq
Yu SugiharaiD, Lester YoungiD, Hiroki Yaegashi, Satoshi NatsumeiD, Daniel John SheaiD, Hiroki TakagiiD, Helen BookeriD, Hideki InnaniD, Ryohei TerauchiiD, Akira AbeiD
Abstract
Bulked segregant analysis implemented in MutMap and QTL-seq is a powerful and efficient method to identify agronomically important loci. However, the previous pipelines were not user-friendly to install and run. Here, we describe new pipelines for MutMap and QTL-seq. These updated pipelines are approximately 5-8 times faster than the previous pipeline, are easier for novice users to use and can be easily installed through bioconda with all dependencies.
02 /Specification & Classification
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