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MicrobiologybioRxiv
Preprint

No-code microbial growth phenotyping with GUIbiont

Edgar Zanella AlvarengaiD, Edoardo OltoliniiD, Fernanda PinheiroiD

Abstract

Microbial growth screens generate thousands of curves, but cross-experiment comparison and mapping growth phenotypes to genotypes or environments routinely require custom code. GUIbiont is a no-code browser application for quality control, curve fitting, clustering and metadata-linked analysis with machine learning techniques. Interactive sessions export as Julia scripts, allowing users to reproduce or extend browser analyses. Validated across 3,885 E. coli deletion strains and 13,608 defined-media curves, GUIbiont recovered known auxotrophic and nutrient-dependent phenotypes.

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02 /Specification & Classification

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