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mtgRNA-db: An annotated database of multi-target CRISPR-Cas9 guide-RNAs in the human genome

Aram Sandaldjian ModrekiD, Khoi HuynhiD, Catherine DoiD, Jerome M. KarpiD, Yingwen DingiD, Ze-Yan ZhangiD, Ravesanker EzhilarasaniD, Belen Valor, Giulia CovaiD, Jane A. SkokiD, Erik P. SulmaniD

Abstract

CRISPR-Cas9 guide-RNA design tools can be used to identify guide-RNAs that target single human genomic loci. However, these approaches limit their effect to a single locus. Here, we generate a database of potential individual guide-RNAs that target multiple sites in the genome at once. All guide-RNAs in this database are curated with on- and off-target quantification and enrichment scores for genomic elements such as gene elements, regulatory elements, repetitive elements, and transcription factor motifs. This tool enables rationale mass targeting of genomic loci with a single guide for functional studies. We created a web-app for user-friendly guide-RNA selection (https://modreklab.shinyapps.io/guiderna/).

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02 /Specification & Classification

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