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BioinformaticsBMC Bioinformatics
Peer-reviewed journal article

bioSyntax: Syntax Highlighting For Computational Biology

Artem BabaianiD, Anicet EbouiD, Alyssa Fegen, Jeffrey KamiD, Gherman NovakovskyiD, Jasper WongiD, Dylan AïssiiD, Yao LiiD

Abstract

Computational biology requires the reading and comprehension of biological data files. Plain-text formats such as SAM, VCF, GTF, PDB and FASTA, often contain critical information that is obfuscated by the complexity of the data structures. bioSyntax (http://bioSyntax.org) is a freely available suite of syntax highlighting packages for vim, gedit, Sublime, and less, which aids computational scientists to parse and work with their data more efficiently.

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02 /Specification & Classification

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