genome assembly

This paper develops a genetic toolkit for Sporosarcina pasteurii, enabling genome modification and uncovering genes involved in biocementation.

The paper generates whole genome assemblies for two Curculio weevil species and annotates their genomes, revealing expanded repetitive elements for comparative genomic studies.

This paper presents the first de novo genome assembly of Poecilozonites bermudensis, confirming an ancestral genome duplication in land snails and supporting evolutionary hypotheses.

The paper presents chromosome-length genome assemblies for three marten subspecies, revealing genomic features and improving taxonomic understanding.

This paper improves the genome assembly of Onygena corvina using a hybrid sequencing approach, resulting in a more complete and contiguous genome with enhanced gene annotations.

The paper isolates and analyzes 20 new Ampelomyces strains from Australian powdery mildews, revealing four molecular taxonomic units and generating two high-quality genome assemblies.

This paper introduces DAF-seq, a method for single-molecule and single-cell chromatin fiber sequencing, enabling precise analysis of protein occupancy and chromatin accessibility.

The paper identifies and optimizes a novel chimeric transposase system from pea aphids, enhancing transposition efficiency in mammalian cells for improved biologics manufacturing.

The paper uses whole-genome resequencing to analyze population structure and diversity in Antarctic toothfish, finding exceptions to panmixia and reduced diversity in the Ross Sea post-2000.

The paper presents a high-quality reference genome and genetic map of Allium porrum, revealing pericentromeric recombination patterns and genomic relationships within the Allium genus.

The paper describes the immortalization of human nasal and bronchial airway epithelial cells using hTERT overexpression, enabling long-term genome editing studies.

This study determines the optimal SNP density for maximizing genomic prediction accuracy and heritability estimates in three spruce species, finding plateaus between 4000 to 8000 SNPs.

The paper presents the first reference genome of the Black Redstart, assembled using PacBio HiFi sequencing and annotated with 18,609 genes, providing a resource for studying high-altitude adaptation in passerines.

This paper presents a high-quality genome assembly and annotation for the bumble bee wax moth, Aphomia sociella, using long-read sequencing, and places it phylogenetically within the Lepidoptera order.

This paper presents a chromosome-level genome assembly for Mozambique tilapia using PacBio HiFi and Omni-C sequencing, providing a resource for conservation and aquaculture.

The paper presents the chromosome-level genome assembly of Androsace saussurei, a plant adapted to extreme alpine environments.

This paper compares DNA shotgun read measurements and cytometric genome size estimates across species, finding discrepancies and highlighting the need for better measurement controls.

This study uses paleogenomics to analyze 20 ancient individuals from the Chonos Archipelago, revealing unique genetic clusters and connections to neighboring Indigenous groups.

The paper introduces Cornetto, a method using targeted long-read sequencing to improve genome assembly quality and completeness, particularly for challenging regions and sample types.

The paper presents a high-quality genome assembly and functional annotation of Hiroshima-derived Pacific oyster Magallana gigas, providing a genomic resource for studying genetic diversity and environmental adaptations.

This study analyzes the population genetics of the endangered Island Marble butterfly using non-invasive DNA samples to assess genetic diversity, structure, and evolutionary history.

KegAlign improves pairwise genome alignment speed using GPU acceleration and diagonal partitioning, achieving 150x faster alignment than lastZ for human/mouse genomes.

The paper presents a new zebrafish genome assembly with increased sequence coverage and improved annotation, along with a pangenome resource for variant analysis.

The paper presents KOREF1-G-TTAGGA, a high-quality telomere-to-telomere Korean reference genome with haplotype-resolved sequences and multi-omic data for precision medicine.

The paper reports the assembly of 152 high-quality bacterial genomes from the Lotus japonicus root commensal collection using long-read sequencing.

This study characterizes morphological variation and DUS traits in Bitter Gourd varieties from Eastern India to aid in varietal identification and genetic improvement.

The paper presents a genome assembly for white sturgeon and identifies genetic markers for sex determination, aiding conservation and aquaculture efforts.

This study uses multiomic approaches to identify genetic variants and genes associated with sucrose accumulation in sugarcane, providing insights for breeding and biotechnology.

Bin Chicken improves genome recovery from metagenomes by coassembling targeted samples, recovering 77,562 microbial genomes including many novel species.

The paper presents a high-quality de novo genome assembly of Ansells mole-rat using long-read, short-read, and Hi-C data, enabling genetic and phylogenetic studies.